ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12e09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188339.1| Oryza sativa (japonica cultivar-group), Ozsa809... 82 1e-12
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
3dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
4dbj|AK110817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
5gb|AC166286.14| Medicago truncatula clone mth2-173c1, complete s... 48 0.019
6dbj|AP002002.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 1.2
7ref|XM_463547.1| Oryza sativa (japonica cultivar-group), predic... 40 4.7
8gb|AC024288.9| Homo sapiens, clone RP11-23B5, complete sequence 40 4.7
9gb|AC092757.2| Homo sapiens chromosome 15 clone RP11-59H7 map 15... 40 4.7
10gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa004... 40 4.7
11gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, co... 40 4.7
12dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
13gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 4.7 
>ref|NM_188339.1| Oryza sativa (japonica cultivar-group), Ozsa8090 predicted mRNA
          Length = 3249

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                        
Query: 240  accagtaacctctgcaagagcacctgccttgttcaaaatgatggaacctgttggaatccc 299
            |||| |||||||||||||| ||||| |||| ||||||||| || || || || |||||||
Sbjct: 3247 accaataacctctgcaagaacacctaccttcttcaaaatggtgaaatctatttgaatccc 3188

                                                             
Query: 300  tcaatatgatctccctgctgcacatcttggatatgaacttggcggcctc 348
            |||| || ||||| || |  ||||||||||| ||||||||||| |||||
Sbjct: 3187 tcaaaattatctctctaccacacatcttggagatgaacttggcagcctc 3139
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 92/109 (84%)
 Strand = Plus / Plus

                                                                           
Query: 240     accagtaacctctgcaagagcacctgccttgttcaaaatgatggaacctgttggaatccc 299
               |||| |||||||||||||| ||||| |||| ||||||||| || || || || |||||||
Sbjct: 5763656 accaataacctctgcaagaacacctaccttcttcaaaatggtgaaatctatttgaatccc 5763715

                                                                
Query: 300     tcaatatgatctccctgctgcacatcttggatatgaacttggcggcctc 348
               |||| || ||||| || |  ||||||||||| ||||||||||| |||||
Sbjct: 5763716 tcaaaattatctctctaccacacatcttggagatgaacttggcagcctc 5763764



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 278      tgatggaacctgttggaatccctcaatatgatctccctgc 317
                |||||||| | |||||| || |||| ||||||||||||||
Sbjct: 38430293 tgatggaagcagttggagtctctcagtatgatctccctgc 38430254
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>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451C06
          Length = 151773

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 92/109 (84%)
 Strand = Plus / Plus

                                                                         
Query: 240   accagtaacctctgcaagagcacctgccttgttcaaaatgatggaacctgttggaatccc 299
             |||| |||||||||||||| ||||| |||| ||||||||| || || || || |||||||
Sbjct: 88358 accaataacctctgcaagaacacctaccttcttcaaaatggtgaaatctatttgaatccc 88417

                                                              
Query: 300   tcaatatgatctccctgctgcacatcttggatatgaacttggcggcctc 348
             |||| || ||||| || |  ||||||||||| ||||||||||| |||||
Sbjct: 88418 tcaaaattatctctctaccacacatcttggagatgaacttggcagcctc 88466
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>dbj|AK110817.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G05, full
            insert sequence
          Length = 2008

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 91/109 (83%)
 Strand = Plus / Minus

                                                                        
Query: 240  accagtaacctctgcaagagcacctgccttgttcaaaatgatggaacctgttggaatccc 299
            |||| |||||||||||||| ||||| |||| ||||||||| || || || || |||||||
Sbjct: 2004 accaataacctctgcaagaacacctaccttcttcaaaatggtgaaatctatttgaatccc 1945

                                                             
Query: 300  tcaatatgatctccctgctgcacatcttggatatgaacttggcggcctc 348
            |||| || ||||| || |  |||| |||||| ||||||||||| |||||
Sbjct: 1944 tcaaaattatctctctaccacacaccttggagatgaacttggcagcctc 1896
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>gb|AC166286.14| Medicago truncatula clone mth2-173c1, complete sequence
          Length = 114609

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 271   ttcaaaatgatggaacctgttggaatccctca 302
             ||||||||||||||||||| ||| ||||||||
Sbjct: 36686 ttcaaaatgatggaacctgctggcatccctca 36717
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>dbj|AP002002.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-692F4, complete
             sequence
          Length = 112270

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 138   gatacagagatattacatgct 158
             |||||||||||||||||||||
Sbjct: 47945 gatacagagatattacatgct 47925
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>ref|XM_463547.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1554

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 278  tgatggaacctgttggaatccctcaatatgatctccctgc 317
            |||||||| | |||||| || |||| ||||||||||||||
Sbjct: 1514 tgatggaagcagttggagtctctcagtatgatctccctgc 1475
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>gb|AC024288.9| Homo sapiens, clone RP11-23B5, complete sequence
          Length = 169540

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   tctgggccaaaatcatttcc 120
             ||||||||||||||||||||
Sbjct: 35788 tctgggccaaaatcatttcc 35807
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>gb|AC092757.2| Homo sapiens chromosome 15 clone RP11-59H7 map 15q21.3, complete sequence
          Length = 171114

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    gtaacctctgcaagagcacc 263
              ||||||||||||||||||||
Sbjct: 101124 gtaacctctgcaagagcacc 101105
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>gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence
          Length = 193444

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 278   tgatggaacctgttggaatccctcaatatgatctccctgc 317
             |||||||| | |||||| || |||| ||||||||||||||
Sbjct: 23392 tgatggaagcagttggagtctctcagtatgatctccctgc 23353
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>gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, complete sequence
          Length = 224670

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    tctgggccaaaatcatttcc 120
              ||||||||||||||||||||
Sbjct: 205516 tctgggccaaaatcatttcc 205535
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>dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0408G07
          Length = 126631

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 278   tgatggaacctgttggaatccctcaatatgatctccctgc 317
             |||||||| | |||||| || |||| ||||||||||||||
Sbjct: 15708 tgatggaagcagttggagtctctcagtatgatctccctgc 15669
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 267     cttgttcaaaatgatggaac 286
               ||||||||||||||||||||
Sbjct: 1875429 cttgttcaaaatgatggaac 1875410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,001,098
Number of Sequences: 3902068
Number of extensions: 3001098
Number of successful extensions: 63950
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63891
Number of HSP's gapped (non-prelim): 59
length of query: 352
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 330
effective length of database: 17,147,199,772
effective search space: 5658575924760
effective search space used: 5658575924760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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