ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12e06 |
|---|---|
| Clone Library Name | barley_pub |
>SYL_PROMP (Q7V1I2) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 858 Score = 30.8 bits (68), Expect = 0.90 Identities = 13/66 (19%), Positives = 31/66 (46%) Frame = +2 Query: 53 DHYYTQQQTIGIHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQKGACARFAHH 232 ++YY Q + + + ++Y ++W+ + + N Q+ + + + GA Sbjct: 141 ENYYVWTQFLFLELHKAGLVYQKESEVNWDPIDNTVLANEQVDSEGKSWRSGAIVEKKLL 200 Query: 233 TRWYLK 250 T+W+LK Sbjct: 201 TQWFLK 206
>SYL_TROWT (Q83GC6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 806 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/64 (20%), Positives = 29/64 (45%) Frame = +2 Query: 59 YYTQQQTIGIHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQKGACARFAHHTR 238 YY Q + + ++ + Y ++W+ ++ + N Q+ E+ GA T+ Sbjct: 144 YYRWNQWLFLKLYKHGLAYRKKAWVNWDPSDRTVLANEQVLPDGTSERSGALVVKKKLTQ 203 Query: 239 WYLK 250 W+L+ Sbjct: 204 WFLR 207
>SYL_TROW8 (Q83HV5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 806 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/64 (20%), Positives = 29/64 (45%) Frame = +2 Query: 59 YYTQQQTIGIHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQKGACARFAHHTR 238 YY Q + + ++ + Y ++W+ ++ + N Q+ E+ GA T+ Sbjct: 144 YYRWNQWLFLKLYKHGLAYRKKAWVNWDPSDRTVLANEQVLPDGTSERSGALVVKKKLTQ 203 Query: 239 WYLK 250 W+L+ Sbjct: 204 WFLR 207
>HILD_SALTY (P41782) Transcriptional regulator hilD| Length = 309 Score = 28.9 bits (63), Expect = 3.4 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +3 Query: 18 TRSNQYINSTFKIITIPNNKL*ESTNHNTTYCTIP*FILIGN*QKV 155 T N Y++S F ++ + KL S NH+T YC P +++ Q V Sbjct: 41 TIKNLYVSS-FTLVCFRSGKLTISNNHDTIYCDEPGMLVLKKEQVV 85
>SYL_PROMA (Q7VBZ5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 870 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/67 (20%), Positives = 28/67 (41%) Frame = +2 Query: 50 QDHYYTQQQTIGIHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQKGACARFAH 229 ++ YY Q I + + + Y ++W+ + + N Q+ R + GA Sbjct: 142 KEEYYKWTQYIFLELYEAGLAYQKSATVNWDPIDKTVLANEQVDANGRSWRSGALVEKKK 201 Query: 230 HTRWYLK 250 +W+LK Sbjct: 202 LKQWFLK 208
>TSN15_HUMAN (O95858) Tetraspanin-15 (Tspan-15) (Transmembrane 4 superfamily| member 15) (Tetraspan NET-7) Length = 294 Score = 28.1 bits (61), Expect = 5.8 Identities = 8/22 (36%), Positives = 17/22 (77%) Frame = -1 Query: 121 GIVQYVVLWFVDSYSLLLGIVM 56 G V++WF+D+Y+++ GI++ Sbjct: 218 GCTNAVIIWFMDNYTIMAGILL 239
>SYL_SILPO (Q5LMY0) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 852 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/64 (23%), Positives = 29/64 (45%) Frame = +2 Query: 59 YYTQQQTIGIHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQKGACARFAHHTR 238 YY QQQ + + + ++Y ++W+ + + N Q+ R + GA T+ Sbjct: 131 YYGQQQALFLDFLEKGLVYRKNAVVNWDPVDMTVLANEQVED-GRGWRSGALVERRELTQ 189 Query: 239 WYLK 250 W+ K Sbjct: 190 WFFK 193
>ROCA_STAAW (Q8NUR2) 1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C| dehydrogenase) Length = 514 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 86 IHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQ 202 +HK Y+ + I L ELT G+T N M V K+Q Sbjct: 328 VHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQ 366
>ROCA_STAAS (Q6G6C0) 1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C| dehydrogenase) Length = 514 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 86 IHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQ 202 +HK Y+ + I L ELT G+T N M V K+Q Sbjct: 328 VHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQ 366
>ROCA_STAAR (Q6GDP4) 1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C| dehydrogenase) Length = 514 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 86 IHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQ 202 +HK Y+ + I L ELT G+T N M V K+Q Sbjct: 328 VHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQ 366
>ROCA_STAAN (P99076) 1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C| dehydrogenase) Length = 514 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 86 IHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQ 202 +HK Y+ + I L ELT G+T N M V K+Q Sbjct: 328 VHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQ 366
>ROCA_STAAM (P63939) 1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C| dehydrogenase) Length = 514 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 86 IHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQ 202 +HK Y+ + I L ELT G+T N M V K+Q Sbjct: 328 VHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQ 366
>ROCA_STAAC (Q5HCZ6) 1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C| dehydrogenase) Length = 514 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 86 IHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQ 202 +HK Y+ + I L ELT G+T N M V K+Q Sbjct: 328 VHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQ 366
>APAH_ACTAC (O52655) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC| 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase) Length = 275 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +2 Query: 74 QTIGIHKPQYN-ILYNSLIHLDWELTEGSTCTN 169 Q + IH P N +L ++ I DW+LT C N Sbjct: 105 QPLLIHNPAQNFVLVHAGISPDWDLTAAKVCAN 137
>ATG9_CANAL (Q5ANC9) Autophagy-related protein 9| Length = 952 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/64 (25%), Positives = 31/64 (48%) Frame = +2 Query: 8 RAKNPVQSIHK*YIQDHYYTQQQTIGIHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTV 187 R +NP+QSI + +YY QQ L +S+ +++++ + + M + Sbjct: 883 RNRNPIQSIDPAIMTGNYYDQQS-----------LNSSIYNINYKFDDSGLLQDETMNSS 931 Query: 188 SRKE 199 SRK+ Sbjct: 932 SRKK 935
>VE6_CRPVK (P03127) Protein E6| Length = 273 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 2/19 (10%) Frame = -3 Query: 149 LSIPNQDELR--NCTICCI 99 L+IP + ELR NCT+CCI Sbjct: 107 LTIPEKIELRARNCTLCCI 125
>SYLM_SCHPO (Q09828) Putative leucyl-tRNA synthetase, mitochondrial precursor| (EC 6.1.1.4) (Leucine--tRNA ligase) (LeuRS) Length = 874 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/64 (20%), Positives = 28/64 (43%) Frame = +2 Query: 59 YYTQQQTIGIHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQKGACARFAHHTR 238 YY Q + + + Y + ++W+ + + N Q+ + R + GA + + Sbjct: 157 YYKWSQYLFLQMFHKGLAYQAEATVNWDPVDCTVLANEQVDSHGRSWRSGAIVEKKNLRQ 216 Query: 239 WYLK 250 W+LK Sbjct: 217 WFLK 220
>SYL_ANASP (Q8YS09) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 872 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/64 (23%), Positives = 26/64 (40%) Frame = +2 Query: 59 YYTQQQTIGIHKPQYNILYNSLIHLDWELTEGSTCTNAQMTTVSRKEQKGACARFAHHTR 238 YY Q I + Q + Y ++W+ + + N Q+ R + GA + Sbjct: 132 YYKWTQWIFLQFLQAGLAYQKEAAVNWDPIDQTVLANEQVDNEGRSWRSGAIVERKLLRQ 191 Query: 239 WYLK 250 W+LK Sbjct: 192 WFLK 195 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,096,659 Number of Sequences: 219361 Number of extensions: 910758 Number of successful extensions: 2014 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1992 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2013 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
