>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein|
            1) (High pigmentation protein 1)
          Length = 1090

 Score = 67.8 bits (164), Expect = 6e-12
 Identities = 32/39 (82%), Positives = 38/39 (97%)
 Frame = -3

Query: 350  DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 234
            DLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH
Sbjct: 1052 DLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1090

>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein|
            1)
          Length = 1095

 Score = 67.8 bits (164), Expect = 6e-12
 Identities = 32/39 (82%), Positives = 38/39 (97%)
 Frame = -3

Query: 350  DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 234
            DLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH
Sbjct: 1057 DLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1095

>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding|
            protein 1b) (DDB1b)
          Length = 1088

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 31/39 (79%), Positives = 34/39 (87%)
 Frame = -3

Query: 350  DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 234
            DLIESFLDL+R KMEE++K M V VEEL KRVEELTRLH
Sbjct: 1050 DLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088

>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding|
            protein 1a) (DDB1a)
          Length = 1088

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 30/39 (76%), Positives = 36/39 (92%)
 Frame = -3

Query: 350  DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 234
            DLIESFLDL+R+KME+++K+M V VEEL KRVEELTRLH
Sbjct: 1050 DLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088

>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding|
            protein 1) (UV-damaged DNA-binding factor) (DDB p127
            subunit) (DDBa) (UV-damaged DNA-binding protein 1)
            (UV-DDB 1) (Xeroderma pigmentosum group E-complementing
            protein) (XPCe)
          Length = 1140

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 10/49 (20%)
 Frame = -3

Query: 350  DLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRLH 234
            DLIESFLD++R KM+EV   +              ++L K VEELTR+H
Sbjct: 1092 DLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140

>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding|
            protein 1) (DDB p127 subunit) (DDBa) (UV-damaged
            DNA-binding protein 1) (UV-DDB 1)
          Length = 1140

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 10/49 (20%)
 Frame = -3

Query: 350  DLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRLH 234
            DLIESFLD++R KM+EV   +              ++L K VEELTR+H
Sbjct: 1092 DLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140

>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)|
           (ApoL-IV)
          Length = 351

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -3

Query: 350 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 234
           +L++  LDL++    E A+++    +EL + + ELT +H
Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345

>G168_PARPR (P17053) G surface protein, allelic form 168 precursor|
          Length = 2704

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 133  ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGAT*C 237
            A  TC   + G   +++      K GCT +GAT C
Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671

>MODA_MYCTU (P0A5Y0) Molybdate-binding protein precursor|
          Length = 261

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 344 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 234
           I SF DL R  +  V    +VP    ++R+E+ T +H
Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169

>MODA_MYCBO (P0A5Y1) Molybdate-binding protein precursor|
          Length = 261

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 344 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 234
           I SF DL R  +  V    +VP    ++R+E+ T +H
Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169

>TRX_DROVI (Q24742) Protein trithorax|
          Length = 3828

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 19  VMFDNALLINNGDSPLK-FYISTDKVTLLSKSKTEKRNVATNTCRGS 156
           V F N L  ++  S +K FY   ++V L+S  K +  N   N CRGS
Sbjct: 394 VTFKNILETSDDKSVVKRFYNPDNRVPLVSIMKKDSLNRPLNYCRGS 440

>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)|
          Length = 170

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 350 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 246
           DLI +F + +R KM++  K   +PV +L    K V EL
Sbjct: 96  DLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133

>ZN569_MOUSE (Q80W31) Zinc finger protein 569 (Zinc finger protein 74) (Zfp-74)|
           (Mszf21)
          Length = 679

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
 Frame = +1

Query: 43  INNGDSPL------KFYISTDKVTLLSKSKTEKRNVATNTCRGSFSGRQRFTTQRK---R 195
           ++ G+ P       K +  +  +T+  +S T ++      CR SFS ++ F T +K   R
Sbjct: 368 VHTGEKPYECGECGKAFSQSSALTVHIRSHTGEKPYECKECRKSFSHKKNFITHQKIHTR 427

Query: 196 TNKTGCTRHG 225
               GC   G
Sbjct: 428 EKPYGCNECG 437

>Y429_METAC (Q8TTK2) UPF0272 protein MA0429|
          Length = 396

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 308 EEVAKAMAVPVEELSKRVEELTR 240
           +++AKA  +PV E+ +R EE+ R
Sbjct: 370 KKIAKASGIPVREIMRRTEEVAR 392

>ERG28_ARATH (O80594) Probable ergosterol biosynthetic protein 28|
          Length = 110

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 216 CTSCFICSFSLCCKPL 169
           CT CF+C+F+L  KPL
Sbjct: 55  CTLCFLCAFNLENKPL 70

>CCNT1_HORSE (Q9XT26) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 727

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 347 LIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRVHP 207
           +I+SF   +R+ +   A  +A  VEE  K++E + +   VA   +HP
Sbjct: 71  MIQSFTQFHRNSVAPAALFLAAKVEEQPKKLEHVIK---VAHACLHP 114

>RPF53_MOUSE (Q8K202) DNA-directed RNA polymerase I-associated factor 53 kDa|
           subunit (EC 2.7.7.6) (RNA polymerase I-associated factor
           1)
          Length = 482

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +1

Query: 19  VMFDNALLINNGDSPLKFYISTDKVTLLSKSKTEKRNVATNTCRGSFSG 165
           V F N  L N GD     Y STD   L++  +   R VA  T R S+ G
Sbjct: 41  VQFSNGKLQNPGDMRFTLYNSTD---LVNPRQRSHRIVAAETDRLSYVG 86

>CCNT1_MOUSE (Q9QWV9) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 724

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 347 LIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRVHP 207
           +I+SF   +R  M   A  +A  VEE  K++E + +   VA   +HP
Sbjct: 71  MIQSFTQFHRYSMAPAALFLAAKVEEQPKKLEHVIK---VAHTCLHP 114

>IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma)|
          Length = 166

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 350 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 237
           D+ + FL+ +  K+E+  K + +PV++L    K + EL ++
Sbjct: 99  DMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139

>IFNG_HORSE (P42160) Interferon gamma precursor (IFN-gamma)|
          Length = 166

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 353 DDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 237
           +DL   F + + SK+E+  K + +PV +L    K + EL ++
Sbjct: 98  EDLFVKFFNSSTSKLEDFQKLIQIPVNDLKVQRKAISELIKV 139

>IFNG_EQUAS (O77763) Interferon gamma precursor (IFN-gamma)|
          Length = 166

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 353 DDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 237
           +DL   F + + SK+E+  K + +PV +L    K + EL ++
Sbjct: 98  EDLFVKFFNSSTSKLEDFQKLIQIPVNDLKVQRKAISELIKV 139

>IFNG_CAPHI (P79154) Interferon gamma precursor (IFN-gamma)|
          Length = 166

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 350 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 237
           D+ + FL+ +  K+E+  K + +PV++L    K + EL ++
Sbjct: 99  DMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139

>IFNG_BUBBU (Q8SPW9) Interferon gamma precursor (IFN-gamma)|
          Length = 166

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 350 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 237
           D+ + FL+ +  K+E+  K + +PV++L    K + EL ++
Sbjct: 99  DMFQKFLNGSSEKLEDFKKLIQIPVDDLQTQRKAINELIKV 139

>IFNG_BOVIN (P07353) Interferon gamma precursor (IFN-gamma)|
          Length = 166

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 350 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 237
           D+ + FL+ +  K+E+  K + +PV++L    K + EL ++
Sbjct: 99  DMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,309,231
Number of Sequences: 219361
Number of extensions: 636234
Number of successful extensions: 1970
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1967
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)