ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY494984.1| Triticum aestivum LON1 protease mRNA, complete cds 448 e-123
2gb|AC117239.4| Mus musculus BAC clone RP24-117K6 from chromosome... 46 0.069
3gb|AC132100.3| Mus musculus BAC clone RP24-294D10 from chromosom... 46 0.069
4emb|AL671400.5| Mouse DNA sequence from clone RP23-109C6 on chro... 46 0.069
5emb|BX284114.6| Mouse DNA sequence from clone RP23-258B4 on chro... 46 0.069
6gb|AC156834.2| Mus musculus BAC clone RP24-129O14 from 9, comple... 44 0.27
7gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, co... 42 1.1
8gb|AC140791.4| Gallus gallus BAC clone TAM33-20G4 from chromosom... 42 1.1
9dbj|AP004913.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 1.1
10gb|AE000665.1|MMAE000665 Mus musculus TCR beta locus from bases ... 40 4.2
11gb|AC117678.16| Mus musculus chromosome 6, clone RP23-421M9, com... 40 4.2
12emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n... 40 4.2
13gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete s... 40 4.2
14gb|AF336378.1| Mus musculus Kel blood group protein (Kel), epith... 40 4.2
15emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5,... 40 4.2 
>gb|AY494984.1| Triticum aestivum LON1 protease mRNA, complete cds
          Length = 3143

 Score =  448 bits (226), Expect = e-123
 Identities = 269/282 (95%), Gaps = 1/282 (0%)
 Strand = Plus / Minus

                                                                        
Query: 25   atgatactgcaacattcaattctccctggctgaaataggttacatatacacccaaaccga 84
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3103 atgatactgcaacattcaattctccctggctgaaataggttacatatacacccaaaccga 3044

                                                                        
Query: 85   caacaacaggtggatctccttgctaccaataccaaaccgagcatagatagatgagcatcc 144
            |||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 3043 caacaacaggtggacctccttgctacca-tagcaaaccgagcatagatagatgagcatcc 2985

                                                                        
Query: 145  ctctataaatacaagcacaaagactggagcagatctccctgccgcttttgtggatagcaa 204
            |||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 2984 ctctataaatacaatcacaaagaccagagcagatctccctgccgcttttgtggatagcaa 2925

                                                                        
Query: 205  gtacccatatacacattccgcatattagcttaactgaattggacgagcgatgctggcgtc 264
            ||| ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct: 2924 gtatccatatacacattccgcatattagcttaactgagttggacgagcaacgctggcgtc 2865

                                                      
Query: 265  atgagatttcactccgatggagcaattgctcgcctacgctca 306
            |||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 2864 atgagatttcgctccaacggagcaattgctcgcctacgctca 2823
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>gb|AC117239.4| Mus musculus BAC clone RP24-117K6 from chromosome 18, complete sequence
          Length = 150804

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 151    aaatacaagcacaaagactggagcaga 177
              |||||||||||||||| ||||||||||
Sbjct: 107413 aaatacaagcacaaagtctggagcaga 107439
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>gb|AC132100.3| Mus musculus BAC clone RP24-294D10 from chromosome 18, complete
             sequence
          Length = 173949

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 151   aaatacaagcacaaagactggagcaga 177
             |||||||||||||||| ||||||||||
Sbjct: 16285 aaatacaagcacaaagtctggagcaga 16311
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>emb|AL671400.5| Mouse DNA sequence from clone RP23-109C6 on chromosome X, complete
             sequence
          Length = 188391

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 151   aaatacaagcacaaagactggagcaga 177
             ||||||||| |||||||||||||||||
Sbjct: 93510 aaatacaaggacaaagactggagcaga 93484
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>emb|BX284114.6| Mouse DNA sequence from clone RP23-258B4 on chromosome X, complete
             sequence
          Length = 181900

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 151   aaatacaagcacaaagactggagcaga 177
             ||||||||||||||||| |||||||||
Sbjct: 19672 aaatacaagcacaaagagtggagcaga 19698
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>gb|AC156834.2| Mus musculus BAC clone RP24-129O14 from 9, complete sequence
          Length = 114471

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 151   aaatacaagcacaaagactggagcag 176
             ||||||||| ||||||||||||||||
Sbjct: 45518 aaatacaagtacaaagactggagcag 45493
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>gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, complete sequence
          Length = 202155

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 30    actgcaacattcaattctccc 50
             |||||||||||||||||||||
Sbjct: 80340 actgcaacattcaattctccc 80320
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>gb|AC140791.4| Gallus gallus BAC clone TAM33-20G4 from chromosome ul, complete
            sequence
          Length = 219854

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 127  atagatagatgagcatccctc 147
            |||||||||||||||||||||
Sbjct: 6522 atagatagatgagcatccctc 6502
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>dbj|AP004913.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02A14, TM0072a,
            complete sequence
          Length = 100740

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 213  atacacattccgcatattagcttaa 237
            |||||||||||||||||||| ||||
Sbjct: 4022 atacacattccgcatattagattaa 4046
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>gb|AE000665.1|MMAE000665 Mus musculus TCR beta locus from bases 501860 to 700960 (section 3 of 3)
              of the complete sequence
          Length = 199101

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    gcttttgtggatagcaagta 207
              ||||||||||||||||||||
Sbjct: 194392 gcttttgtggatagcaagta 194373
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>gb|AC117678.16| Mus musculus chromosome 6, clone RP23-421M9, complete sequence
          Length = 204437

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   gcttttgtggatagcaagta 207
             ||||||||||||||||||||
Sbjct: 96556 gcttttgtggatagcaagta 96537
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>emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n9, COMPLETE SEQUENCE
          Length = 119528

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  cctctataaatacaagcaca 163
            ||||||||||||||||||||
Sbjct: 9634 cctctataaatacaagcaca 9615
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>gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete sequence
          Length = 85905

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   cctctataaatacaagcaca 163
             ||||||||||||||||||||
Sbjct: 64740 cctctataaatacaagcaca 64759



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   cctctataaatacaagcaca 163
             ||||||||||||||||||||
Sbjct: 55200 cctctataaatacaagcaca 55219
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>gb|AF336378.1| Mus musculus Kel blood group protein (Kel), epithelial calcium channel 1
              (Ecac1), epithelial calcium channel 2 (Ecac2), and ephrin
              type A receptor (Mep) genes, complete cds; and T cell
              receptor beta chain (Tcr) gene, partial cds
          Length = 169781

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    gcttttgtggatagcaagta 207
              ||||||||||||||||||||
Sbjct: 142129 gcttttgtggatagcaagta 142148
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>emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5, COMPLETE SEQUENCE
          Length = 106640

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    cctctataaatacaagcaca 163
              ||||||||||||||||||||
Sbjct: 105678 cctctataaatacaagcaca 105659



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   cctctataaatacaagcaca 163
             ||||||||||||||||||||
Sbjct: 96032 cctctataaatacaagcaca 96013


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,276,416
Number of Sequences: 3902068
Number of extensions: 2276416
Number of successful extensions: 32220
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32199
Number of HSP's gapped (non-prelim): 20
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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