>VPS18_MOUSE (Q8R307) Vacuolar protein sorting 18|
          Length = 973

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 217 PTRTHFTLCNCVAVCSHLSHHRAC-HIH 297
           P R H+ L   + +C+   HHRAC H++
Sbjct: 690 PHRVHYDLKYALRLCAEHGHHRACVHVY 717

>VPS18_HUMAN (Q9P253) Vacuolar protein sorting 18 (hVPS18)|
          Length = 973

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 217 PTRTHFTLCNCVAVCSHLSHHRAC-HIH 297
           P R H+ L   + +C+   HHRAC H++
Sbjct: 690 PHRVHYDLKYALRLCAEHGHHRACVHVY 717

>UL04_HCMVA (P17146) Early glycoprotein GP48 precursor|
          Length = 152

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 102 VFGW*KPDICNFFPKESMNLRKKERRMQVLSI 7
           + GW    IC+FFPK   N  ++  R +V ++
Sbjct: 78  LLGWGHKSICSFFPKLQGNYNEQHYRYEVANL 109

>YEAE_SCHPO (O14079) Hypothetical protein UNK4.14 in chromosome I|
          Length = 520

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 230 CVRVGKIVDGRP---KVAPREANWMFKVVD*HFHLCAN 126
           C++ GK++D R    K    EA W F++ D H   C N
Sbjct: 350 CIKSGKVLDFRSYKYKDEEAEAKWGFRLDDIHRRTCFN 387

>LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related protein 2 precursor|
            (Megalin) (Glycoprotein 330) (gp330)
          Length = 4655

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 313  CRPHLRGCDKHDDEKGDYKQRRSC 242
            C P +  CD+H+D  GDY   R C
Sbjct: 3005 CIPKIFRCDRHND-CGDYSDERGC 3027

>RUVB_PROMP (Q7UZP3) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 352

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 157 TLNI-QFASLGATLGLPSTILPTRTHFTLCNCVAVCSHLSHHRACHIHADEVGRRCFHSG 333
           T+N+ +F  +GAT  L S   P R  F LC+ + + S+   H+     A  +  +  +  
Sbjct: 166 TINLPKFTLIGATTKLASISAPLRDRFGLCHKIELYSNDELHQIIFNFATLINLQLENDA 225

Query: 334 TTALS 348
            +AL+
Sbjct: 226 CSALA 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,366,901
Number of Sequences: 219361
Number of extensions: 861594
Number of successful extensions: 1888
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)