Clone Name | rbastl12e03 |
---|---|
Clone Library Name | barley_pub |
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Plus Query: 29 ctctcttttttcctcaagttcat 51 ||||||||||||||||||||||| Sbjct: 1243547 ctctcttttttcctcaagttcat 1243569
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Plus Query: 29 ctctcttttttcctcaagttcat 51 ||||||||||||||||||||||| Sbjct: 1219683 ctctcttttttcctcaagttcat 1219705
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Plus Query: 29 ctctcttttttcctcaagttcat 51 ||||||||||||||||||||||| Sbjct: 1219629 ctctcttttttcctcaagttcat 1219651
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Plus Query: 29 ctctcttttttcctcaagttcat 51 ||||||||||||||||||||||| Sbjct: 1251492 ctctcttttttcctcaagttcat 1251514
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Plus Query: 29 ctctcttttttcctcaagttcat 51 ||||||||||||||||||||||| Sbjct: 1219561 ctctcttttttcctcaagttcat 1219583
>emb|CR392026.10| Zebrafish DNA sequence from clone DKEY-153N9 in linkage group 2, complete sequence Length = 191490 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 ttctcctctcttttttcctca 44 ||||||||||||||||||||| Sbjct: 141831 ttctcctctcttttttcctca 141811
>gb|AC151789.1| Ornithorhynchus anatinus chromosome UNK clone OABb-148A1, complete sequence Length = 125903 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 attctcctctcttttttcct 42 |||||||||||||||||||| Sbjct: 120366 attctcctctcttttttcct 120347
>gb|AC005723.1| Homo sapiens chromosome 5, BAC clone 194j15 (LBNL H137) - BAC clone 35G8 (LBNL H138) - BAC clone 194o13 (LBNL H106), complete sequence Length = 127766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 attctcctctcttttttcct 42 |||||||||||||||||||| Sbjct: 84448 attctcctctcttttttcct 84429
>ref|NM_001012957.1| Homo sapiens disrupted in schizophrenia 1 (DISC1), transcript variant Lv, mRNA Length = 7003 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gcttctcttggggccacctt 194 |||||||||||||||||||| Sbjct: 4122 gcttctcttggggccacctt 4103
>ref|NM_018662.2| Homo sapiens disrupted in schizophrenia 1 (DISC1), transcript variant L, mRNA Length = 7069 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gcttctcttggggccacctt 194 |||||||||||||||||||| Sbjct: 4188 gcttctcttggggccacctt 4169
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence Length = 109793 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 caaatgtcaggtttctacca 93 |||||||||||||||||||| Sbjct: 29616 caaatgtcaggtttctacca 29597
>emb|AL596109.6| Human DNA sequence from clone RP11-695D11 on chromosome 1, complete sequence Length = 82965 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 attctcctctcttttttcct 42 |||||||||||||||||||| Sbjct: 10833 attctcctctcttttttcct 10814
>emb|AL445200.5| Human DNA sequence from clone RP5-852F22 on chromosome 1 Contains the 3' end of the DISC1 gene for disrupted in schizophrenia 1, complete sequence Length = 45435 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gcttctcttggggccacctt 194 |||||||||||||||||||| Sbjct: 13712 gcttctcttggggccacctt 13693
>emb|AL135911.16| Human DNA sequence from clone RP3-439I14 on chromosome 6q16.3-22.1 Contains part of a novel gene, part of the gene for a novel protein similar to FLJ12457 (contains a 'Cold-shock' DNA-binding domain). Contains two CpG islands, complete sequence Length = 108907 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ttctcctctcttttttcctc 43 |||||||||||||||||||| Sbjct: 34041 ttctcctctcttttttcctc 34060
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 aactttgaacatccaatttgcttc 179 ||||||||| |||||||||||||| Sbjct: 2060494 aactttgaagatccaatttgcttc 2060471
>gb|AC118480.3| Homo sapiens BAC clone RP11-393K13 from 4, complete sequence Length = 108490 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 atgttttcattcagggacca 337 |||||||||||||||||||| Sbjct: 58194 atgttttcattcagggacca 58175
>gb|AC027796.9| Homo sapiens chromosome 17, clone RP11-235E17, complete sequence Length = 127431 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tttcctcaagttcatacttt 56 |||||||||||||||||||| Sbjct: 29953 tttcctcaagttcatacttt 29972
>gb|AC087260.15| Homo sapiens 12p BAC RP11-437F6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174804 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 ctcctctcttttttcctcaagttc 49 ||||||||||||||| |||||||| Sbjct: 114332 ctcctctcttttttcttcaagttc 114355
>gb|AC008588.8| Homo sapiens chromosome 5 clone CTC-573M9, complete sequence Length = 213167 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 attctcctctcttttttcct 42 |||||||||||||||||||| Sbjct: 117692 attctcctctcttttttcct 117673
>gb|AC027691.13|AC027691 Homo sapiens chromosome 1 clone RP11-287O16, complete sequence Length = 175977 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 attctcctctcttttttcct 42 |||||||||||||||||||| Sbjct: 81149 attctcctctcttttttcct 81168
>gb|AF222980.1|AF222980 Homo sapiens disrupted in Schizophrenia 1 protein (DISC1) mRNA, complete cds Length = 6930 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gcttctcttggggccacctt 194 |||||||||||||||||||| Sbjct: 4188 gcttctcttggggccacctt 4169
>gb|AC079115.7| Homo sapiens BAC clone RP11-102M8 from 2, complete sequence Length = 177285 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acacaggtgaaagtgttagt 151 |||||||||||||||||||| Sbjct: 91906 acacaggtgaaagtgttagt 91925
>gb|AF168787.1|AF168787 Homo sapiens vanilloid receptor gene, partial sequence; CARKL and CTNS genes, complete cds; TIP1 gene, partial cds; P2X5b and P2X5a genes, complete cds; and HUMINAE gene, partial cds Length = 200237 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 tttcctcaagttcatacttt 56 |||||||||||||||||||| Sbjct: 68279 tttcctcaagttcatacttt 68260
>emb|AJ336198.1|HSA336198 Homo sapiens genomic sequence surrounding NotI site, clone HSJ-EJ1RS Length = 725 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 gggccaccttgggtcttcca 204 |||||||||||||||||||| Sbjct: 640 gggccaccttgggtcttcca 621
>emb|CT485796.1| Medicago truncatula chromosome 5 clone mth2-154i23, COMPLETE SEQUENCE Length = 129047 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cttttttcctcaagttcata 52 |||||||||||||||||||| Sbjct: 13604 cttttttcctcaagttcata 13623
>dbj|AB007926.1| Homo sapiens mRNA for KIAA0457 protein, partial cds Length = 6833 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gcttctcttggggccacctt 194 |||||||||||||||||||| Sbjct: 4108 gcttctcttggggccacctt 4089 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,251,475 Number of Sequences: 3902068 Number of extensions: 3251475 Number of successful extensions: 61212 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61048 Number of HSP's gapped (non-prelim): 164 length of query: 348 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 326 effective length of database: 17,147,199,772 effective search space: 5589987125672 effective search space used: 5589987125672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)