ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 32 0.52
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 32 0.52
3UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 30 1.5
4TX13B_HUMAN (Q9BXU2) Testis-expressed sequence 13B protein 27 9.7
5IF4E2_ARATH (O04663) Eukaryotic translation initiation factor 4E... 27 9.7

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 17/31 (54%), Positives = 17/31 (54%)
 Frame = -2

Query: 332  PSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 240
            PSYRRHL              DIPLVSVYFR
Sbjct: 1021 PSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



to top

>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 17/31 (54%), Positives = 17/31 (54%)
 Frame = -2

Query: 332  PSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 240
            PSYRRHL              DIPLVSVYFR
Sbjct: 1021 PSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



to top

>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/31 (51%), Positives = 16/31 (51%)
 Frame = -2

Query: 332  PSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 240
            P YRRHL              DIPLVSVYFR
Sbjct: 1023 PEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053



to top

>TX13B_HUMAN (Q9BXU2) Testis-expressed sequence 13B protein|
          Length = 312

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 94  HRDGRKENQSVMWLKPPLSLQSLMQLMTCQSIRHDQPQDHVNTDEALLQ 240
           HR G+ +N+ V WL+    L     L+   ++   + Q  +  +EA  Q
Sbjct: 80  HRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEMECNEATFQ 128



to top

>IF4E2_ARATH (O04663) Eukaryotic translation initiation factor 4E-2 (eIF4E-2)|
           (eIF-4E-2) (mRNA cap-binding protein) (eIF-(iso)4F 25
           kDa subunit) (eIF-(iso)4F p28 subunit) (eIF4Eiso
           protein) (eIF(iso)4E)
          Length = 198

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 86  DHWGLIWSCYQTSRFTRHAQHHL 18
           D WGL  + +QTS+ T +A+ HL
Sbjct: 61  DFWGLHETIFQTSKLTANAEIHL 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,915,384
Number of Sequences: 219361
Number of extensions: 728053
Number of successful extensions: 1381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top