ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12d10 |
|---|---|
| Clone Library Name | barley_pub |
>YLN9_CAEEL (Q09512) Hypothetical protein D2013.9 in chromosome II| Length = 662 Score = 50.8 bits (120), Expect = 8e-07 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 6/75 (8%) Frame = -1 Query: 361 RAIYGVDVMLDNR----FKPKILEVTYCPDCTRACQYDTQALVGSQGPIKGSDFFNTVFG 194 RA+YGVD+ML + K +LE+ + PD TRACQY DF +TVF Sbjct: 601 RAMYGVDIMLQHGDNDVIKSTLLEINFMPDTTRACQY-------------YPDFADTVFE 647 Query: 193 CLFLDDL--TNVSPL 155 LFLD++ T V+P+ Sbjct: 648 TLFLDEIDPTKVTPI 662
>TTL12_HUMAN (Q14166) Tubulin--tyrosine ligase-like protein 12| Length = 644 Score = 47.0 bits (110), Expect = 1e-05 Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Frame = -1 Query: 361 RAIYGVDVML------DNR--FKPKILEVTYCPDCTRACQYDTQALVGSQGPIKGSDFFN 206 RA+Y VD+ML D R +P+ILEV + PDC RAC+Y FFN Sbjct: 578 RAMYAVDLMLKWDNGPDGRRVMQPQILEVNFNPDCERACRYH-------------PTFFN 624 Query: 205 TVFGCLFLD 179 VF LFLD Sbjct: 625 DVFSTLFLD 633
>TTLL2_HUMAN (Q9BWV7) Tubulin--tyrosine ligase-like protein 2 (Testis-specific| protein NYD-TSPG) Length = 592 Score = 36.6 bits (83), Expect = 0.015 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -1 Query: 364 CRAIYGVDVMLDNRFKPKILEVTYCPDCTRACQYD 260 C ++G D+++D+ KP +LEV Y P T C D Sbjct: 366 CFELFGFDILIDDNLKPWLLEVNYSPALTLDCSTD 400
>TTLL5_MOUSE (Q8CHB8) Tubulin--tyrosine ligase-like protein 5| Length = 1328 Score = 33.5 bits (75), Expect = 0.13 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 370 SFCRAIYGVDVMLDNRFKPKILEVTYCP 287 S C +YG DV++DN KP +LEV P Sbjct: 344 SSCFELYGFDVLIDNTLKPWLLEVNLSP 371
>TTLL4_HUMAN (Q14679) Tubulin--tyrosine ligase-like protein 4| Length = 1199 Score = 32.3 bits (72), Expect = 0.29 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 364 CRAIYGVDVMLDNRFKPKILEVTYCP 287 C ++G D+MLD KP +LEV P Sbjct: 886 CHELFGFDIMLDENLKPWVLEVNISP 911
>TTLL4_MOUSE (Q80UG8) Tubulin--tyrosine ligase-like protein 4| Length = 1193 Score = 32.3 bits (72), Expect = 0.29 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 364 CRAIYGVDVMLDNRFKPKILEVTYCP 287 C ++G D+MLD KP +LEV P Sbjct: 881 CHELFGFDIMLDENLKPWVLEVNISP 906
>TTLL5_PONPY (Q5R978) Tubulin--tyrosine ligase-like protein 5| Length = 1299 Score = 31.6 bits (70), Expect = 0.49 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 370 SFCRAIYGVDVMLDNRFKPKILEVTYCP 287 S C +YG DV++D+ KP +LEV P Sbjct: 344 SSCFELYGFDVLIDSTLKPWLLEVNLSP 371
>TTLL5_HUMAN (Q6EMB2) Tubulin--tyrosine ligase-like protein 5 (SRC1 and| TIF2-associated modulatory protein) Length = 1277 Score = 31.6 bits (70), Expect = 0.49 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 370 SFCRAIYGVDVMLDNRFKPKILEVTYCP 287 S C +YG DV++D+ KP +LEV P Sbjct: 340 SSCFELYGFDVLIDSTLKPWLLEVNLSP 367
>TTLL1_MOUSE (Q91V51) Tubulin--tyrosine ligase-like protein 1| Length = 423 Score = 31.2 bits (69), Expect = 0.64 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -1 Query: 364 CRAIYGVDVMLDNRFKPKILEVTYCPDCTRACQYD 260 C YG D+++D++ KP ++EV P T + D Sbjct: 306 CFECYGYDIIIDDKLKPWLIEVNASPSLTSSTAND 340
>TTLL1_HUMAN (O95922) Tubulin--tyrosine ligase-like protein 1| Length = 423 Score = 31.2 bits (69), Expect = 0.64 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -1 Query: 364 CRAIYGVDVMLDNRFKPKILEVTYCPDCTRACQYD 260 C YG D+++D++ KP ++EV P T + D Sbjct: 306 CFECYGYDIIIDDKLKPWLIEVNASPSLTSSTAND 340
>CO3_ONCMY (P98093) Complement C3-1 [Contains: Complement C3 beta chain;| Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c fragment; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Comple Length = 1640 Score = 31.2 bits (69), Expect = 0.64 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Frame = +3 Query: 117 NIGVTTAFRQD----YYSGDTFVKSSR-KRQPNTVLKKSLPLMGPWLPTRACVSYWHA-- 275 N+G TT D + S VK R KRQ N ++ S+P+ LP+ V+Y+H Sbjct: 461 NLGPTTIPNHDLTYMFLSRGQLVKVGRFKRQGNALVTLSVPVSKELLPSFRIVAYYHVGA 520 Query: 276 --LVQSGQYVTSKIFGLNLLSSITST 347 LV +V K+ + L +TST Sbjct: 521 ADLVADSVWVDIKVSCMGSL-KVTST 545
>ISPG_PROAC (Q6A7L2) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 380 Score = 30.8 bits (68), Expect = 0.84 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Frame = -1 Query: 349 GVDVMLDNRFKPKILEVTYCPDCTRACQYD--------TQALVGSQGPIKGSDFFNTVFG 194 G+ ++ +P+ LE+ CP C R CQ D T AL G P++ + V G Sbjct: 261 GIKILESLNLRPRGLEIVSCPSCGR-CQVDVLTLANDVTDALEGIDAPLRVA-----VMG 314 Query: 193 CL 188 C+ Sbjct: 315 CV 316
>TTLL5_CERAE (Q6EEF3) Tubulin--tyrosine ligase-like protein 5 (SRC1 and| TIF2-associated modulatory protein) Length = 1295 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -1 Query: 370 SFCRAIYGVDVMLDNRFKPKILEVTYCP 287 S C +YG DV++D KP +LEV P Sbjct: 340 SSCFELYGFDVLIDATLKPWLLEVNLSP 367
>TTLL7_HUMAN (Q6ZT98) Tubulin--tyrosine ligase-like protein 7 (Protein NYD-SP30)| Length = 887 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -1 Query: 370 SFCRAIYGVDVMLDNRFKPKILEVTYCP 287 S C + G D++LD + KP +LE+ P Sbjct: 327 SVCFEVLGFDILLDRKLKPWLLEINRAP 354
>MVHB_METTH (Q50784) Polyferredoxin protein mvhB| Length = 412 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -1 Query: 292 CPDCTRACQYDTQALVGSQGPIKG 221 C DC AC YD L + P+KG Sbjct: 369 CGDCIEACPYDMLKLTDEKVPLKG 392
>THDH_YEAST (P00927) Threonine dehydratase, mitochondrial precursor (EC| 4.3.1.19) (Threonine deaminase) Length = 576 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = -1 Query: 313 KILEVTYCPDCTRACQYDTQALVGSQGPIKGSDFFNTVFGCLFLDD---LTNVSP 158 KI P CT + +Y + +GSQ + G+DF C L + LTN+ P Sbjct: 149 KIPATIVMPVCTPSIKYQNVSRLGSQVVLYGNDFDEAKAECAKLAEERGLTNIPP 203
>YBU4_YEAST (P38254) Protein YBR094W| Length = 753 Score = 28.9 bits (63), Expect = 3.2 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -1 Query: 352 YGVDVMLDNRFKPKILEVTYCPD 284 YGVD ++D+ ++ K+LE+ PD Sbjct: 677 YGVDFLIDSNYEVKLLEINAFPD 699
>SRR_HUMAN (Q9GZT4) Serine racemase (EC 5.1.1.-)| Length = 340 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +1 Query: 13 THNIISEFTGALSFHGCQ-FLDA*TYNIPNPSQGARTLVLQQLFDKTITVVTHSS 174 T +I+++ TG F C+ F ++ I R+LV L K VVTHSS Sbjct: 30 TSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSS 84
>ISPG_CORGL (Q8NP12) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 378 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Frame = -1 Query: 349 GVDVMLDNRFKPKILEVTYCPDCTRA-------CQYDTQALVGSQGPIKGSDFFNTVFGC 191 G ++ +P+ LE+ CP C RA + T+AL G + P++ + V GC Sbjct: 249 GDQILQSLNLRPRKLEIVSCPSCGRAQVDVYSLAEEVTEALDGMEVPLRVA-----VMGC 303 Query: 190 L 188 + Sbjct: 304 V 304
>DCAM_SCHPO (Q9P7E3) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 378 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Frame = +2 Query: 65 SSLMHERTTSLIHLKVQEHWCYNSFSTRLLQW---*HIRQVVEKEAAKHRVEK--ITAFD 229 S+++++ + IH+ QEH Y SF T + Q+ I + +EK K +T F Sbjct: 276 SNMIYKDRYATIHVTPQEHCSYASFETNVSQFQFGRSISETIEKTVKTFGANKFCLTLFQ 335 Query: 230 GALASNE 250 AS E Sbjct: 336 AKGASQE 342
>SYM_METMA (Q8PYJ4) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 715 Score = 28.1 bits (61), Expect = 5.4 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -1 Query: 316 PKILEVTYCPDCTR 275 PKI+E+ YCP C R Sbjct: 127 PKIIEIAYCPACNR 140
>SYM_METAC (Q8TIU5) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 712 Score = 28.1 bits (61), Expect = 5.4 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -1 Query: 316 PKILEVTYCPDCTR 275 PKI+E+ YCP C R Sbjct: 127 PKIIEIAYCPACNR 140
>MLE_DROME (P24785) Dosage compensation regulator (EC 3.6.1.-) (ATP-dependent| RNA helicase mle) (Protein male-less) (Protein no action potential) Length = 1293 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +3 Query: 162 DTFVKSSRKRQPNTVLKKSLPLMGPWLPTRACVSYWHAL-VQSGQYVTSKIFGLNL 326 D+ + KRQ ++V+ PW P +A + WHA + G+ T+ I L++ Sbjct: 311 DSSQQDGEKRQESSVI--------PWAPPQANWNTWHACNIDEGELATTSIDDLSM 358
>MOP_DESGI (Q46509) Aldehyde oxidoreductase (EC 1.2.99.7) (Molybdenum iron| sulfur protein) Length = 907 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +1 Query: 16 HNIISEFTGALSFHGCQFLDA*TYNIPNPSQGARTLVLQQLF 141 H SEF L+ G QF+ A YNIPN RT+ ++ Sbjct: 488 HGPYSEFGDLLTLRGAQFIGA-GYNIPNIRGLGRTVATNHVW 528
>ISPG_MYCPA (Q73VS3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 388 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -1 Query: 349 GVDVMLDNRFKPKILEVTYCPDCTRACQYDTQAL 248 G+ ++ +P+ LE+ CP C RA Q D L Sbjct: 261 GIQILESLNLRPRSLEIVSCPSCGRA-QVDVYTL 293
>PPCKC_CHICK (P05153) Phosphoenolpyruvate carboxykinase, cytosolic [GTP] (EC| 4.1.1.32) (Phosphoenolpyruvate carboxylase) (PEPCK-C) Length = 622 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/51 (23%), Positives = 24/51 (47%) Frame = +2 Query: 167 IRQVVEKEAAKHRVEKITAFDGALASNESLCVILARPRAVRTICHLQNLWL 319 +R+ +E A + E I DG+ N+ + I+ ++ + +N WL Sbjct: 27 VREFIESNAKLCQPESIHICDGSEEENKKILDIMVEQGMIKKLSKYENCWL 77
>HIS8_AQUAE (O67857) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 354 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +3 Query: 102 ISRCKNIGVTTAFRQDYY--SGDTFVKSSRKRQPNTVLK 212 I +N GV + YY SG+TF++ + KR+ VL+ Sbjct: 166 IEEIRNRGVFCVIDEAYYHYSGETFLEDALKREDTVVLR 204
>MAUM_METEX (Q49130) Methylamine utilization ferredoxin-type protein mauM| Length = 220 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Frame = -1 Query: 292 CPDCTRACQYDTQAL--VGSQGPIKGSDFF 209 C C RAC YDT L +G + P+ G+ FF Sbjct: 63 CGLCVRACPYDTLRLAEMGEEAPL-GTPFF 91
>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)| (NADPH-GOGAT) Length = 2111 Score = 27.3 bits (59), Expect = 9.3 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Frame = +3 Query: 39 GCPILSWMSVP*CMNVQHP*SISRCKNIGVTTAFRQDYYSGDT-FVKSSRKRQPNTVLKK 215 G IL+W SVP ++ P ++SR I + Y G+ F +RQ + K+ Sbjct: 169 GLAILAWRSVPCDNSILGPAALSREPTILQPCVVLKAAYDGEAEFDTDLFERQLYVLRKQ 228 Query: 216 SLPLMGPWLPTRACVSYWHALVQSGQYVTSKIF 314 S L+G C + +V GQ +++ Sbjct: 229 SSHLIGKEKWFYICSLHRETIVYKGQLAPVQVY 261 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,969,607 Number of Sequences: 219361 Number of extensions: 1156573 Number of successful extensions: 3312 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3240 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3309 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
