ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470529.1| Oryza sativa (japonica cultivar-group), predic... 200 2e-48
2dbj|AK069518.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 2e-48
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 141 2e-30
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
5gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome... 141 2e-30
6gb|AY109909.1| Zea mays CL23422_1 mRNA sequence 125 1e-25
7ref|NM_106404.3| Arabidopsis thaliana protein binding / tubulin-... 48 0.020
8gb|BT014678.1| Arabidopsis thaliana At1g77550 gene, complete cds 48 0.020
9gb|AC141846.3| Homo sapiens chromosome 16 clone CTB-55P19, compl... 42 1.3
10gb|AC083797.16| Homo sapiens 3 BAC RP11-114A6 (Roswell Park Canc... 42 1.3
11gb|AC092721.2| Homo sapiens chromosome 16 clone RP11-514P19, com... 42 1.3
12gb|AC023820.6| Homo sapiens chromosome 16 clone RP11-1103K14, co... 42 1.3
13gb|AC130528.4| Mus musculus BAC clone RP23-122M14 from chromosom... 40 5.0
14ref|XM_757192.1| Ustilago maydis 521 hypothetical protein (UM061... 40 5.0
15gb|AC107769.7| Mus musculus chromosome 16, clone RP23-130N20, co... 40 5.0
16gb|AC109245.11| Mus musculus chromosome 1, clone RP23-344F24, co... 40 5.0
17gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, com... 40 5.0
18gb|AF463747.1| Mus musculus strain C57BL/6J cytokine gene cluste... 40 5.0
19gb|AC122769.11| Mus musculus chromosome 15, clone RP24-153A12, c... 40 5.0
20gb|AC155279.5| Mus musculus 6 BAC RP24-85A3 (Roswell Park Cancer... 40 5.0 
>ref|XM_470529.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2514

 Score =  200 bits (101), Expect = 2e-48
 Identities = 164/185 (88%)
 Strand = Plus / Minus

                                                                        
Query: 177  tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 236
            ||||| |||||||||||||||||||| || |||||||| ||| ||||  |||||   |||
Sbjct: 2489 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 2430

                                                                        
Query: 237  tggcttccaacgagagcttgtgtgtcatattggcacgccctcgtgcagtccggacaatat 296
            |||||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct: 2429 tggcttcccacgagagcttgagtgtcatatttgcatgccctcgtgcagtccggacaatat 2370

                                                                        
Query: 297  gtcacctccaaaatctttggcttgaatctattatcaagcataacatcaacgccataaatg 356
            ||||||||||||||||| || |||||| ||||||||||||| |||||||| ||||| || 
Sbjct: 2369 gtcacctccaaaatcttcggattgaatttattatcaagcatgacatcaaccccatagata 2310

                 
Query: 357  gccct 361
            |||||
Sbjct: 2309 gccct 2305
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>dbj|AK069518.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024A16, full
            insert sequence
          Length = 2951

 Score =  200 bits (101), Expect = 2e-48
 Identities = 164/185 (88%)
 Strand = Plus / Minus

                                                                        
Query: 177  tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 236
            ||||| |||||||||||||||||||| || |||||||| ||| ||||  |||||   |||
Sbjct: 2749 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 2690

                                                                        
Query: 237  tggcttccaacgagagcttgtgtgtcatattggcacgccctcgtgcagtccggacaatat 296
            |||||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct: 2689 tggcttcccacgagagcttgagtgtcatatttgcatgccctcgtgcagtccggacaatat 2630

                                                                        
Query: 297  gtcacctccaaaatctttggcttgaatctattatcaagcataacatcaacgccataaatg 356
            ||||||||||||||||| || |||||| ||||||||||||| |||||||| ||||| || 
Sbjct: 2629 gtcacctccaaaatcttcggattgaatttattatcaagcatgacatcaaccccatagata 2570

                 
Query: 357  gccct 361
            |||||
Sbjct: 2569 gccct 2565
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  141 bits (71), Expect = 2e-30
 Identities = 113/127 (88%)
 Strand = Plus / Minus

                                                                           
Query: 177     tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 236
               ||||| |||||||||||||||||||| || |||||||| ||| ||||  |||||   |||
Sbjct: 4138887 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 4138828

                                                                           
Query: 237     tggcttccaacgagagcttgtgtgtcatattggcacgccctcgtgcagtccggacaatat 296
               |||||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct: 4138827 tggcttcccacgagagcttgagtgtcatatttgcatgccctcgtgcagtccggacaatat 4138768

                      
Query: 297     gtcacct 303
               |||||||
Sbjct: 4138767 gtcacct 4138761



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                           
Query: 300     acctccaaaatctttggcttgaatctattatcaagcataacatcaacgccataaatggcc 359
               |||||||||||||| || |||||| ||||||||||||| |||||||| ||||| || |||
Sbjct: 4138278 acctccaaaatcttcggattgaatttattatcaagcatgacatcaaccccatagatagcc 4138219

                 
Query: 360     ct 361
               ||
Sbjct: 4138218 ct 4138217



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 76/91 (83%), Gaps = 1/91 (1%)
 Strand = Plus / Minus

                                                                           
Query: 177     tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 236
               ||||| |||||||||||||| |||||   ||||||||| |||||||| ||||| |   ||
Sbjct: 4145772 tcgtccagaaagaggcagccgaacacaaagttgaaaaattcactgcccttgat-gacacc 4145714

                                              
Query: 237     tggcttccaacgagagcttgtgtgtcatatt 267
               |||||||| ||||| ||||| || |||||||
Sbjct: 4145713 tggcttcccacgagcgcttgagtatcatatt 4145683
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  141 bits (71), Expect = 2e-30
 Identities = 113/127 (88%)
 Strand = Plus / Minus

                                                                           
Query: 177     tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 236
               ||||| |||||||||||||||||||| || |||||||| ||| ||||  |||||   |||
Sbjct: 4138996 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 4138937

                                                                           
Query: 237     tggcttccaacgagagcttgtgtgtcatattggcacgccctcgtgcagtccggacaatat 296
               |||||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct: 4138936 tggcttcccacgagagcttgagtgtcatatttgcatgccctcgtgcagtccggacaatat 4138877

                      
Query: 297     gtcacct 303
               |||||||
Sbjct: 4138876 gtcacct 4138870



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                           
Query: 300     acctccaaaatctttggcttgaatctattatcaagcataacatcaacgccataaatggcc 359
               |||||||||||||| || |||||| ||||||||||||| |||||||| ||||| || |||
Sbjct: 4138387 acctccaaaatcttcggattgaatttattatcaagcatgacatcaaccccatagatagcc 4138328

                 
Query: 360     ct 361
               ||
Sbjct: 4138327 ct 4138326



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 76/91 (83%), Gaps = 1/91 (1%)
 Strand = Plus / Minus

                                                                           
Query: 177     tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 236
               ||||| |||||||||||||| |||||   ||||||||| |||||||| ||||| |   ||
Sbjct: 4145881 tcgtccagaaagaggcagccgaacacaaagttgaaaaattcactgcccttgat-gacacc 4145823

                                              
Query: 237     tggcttccaacgagagcttgtgtgtcatatt 267
               |||||||| ||||| ||||| || |||||||
Sbjct: 4145822 tggcttcccacgagcgcttgagtatcatatt 4145792
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>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0050H14, complete sequence
          Length = 142245

 Score =  141 bits (71), Expect = 2e-30
 Identities = 113/127 (88%)
 Strand = Plus / Minus

                                                                         
Query: 177   tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 236
             ||||| |||||||||||||||||||| || |||||||| ||| ||||  |||||   |||
Sbjct: 39524 tcgtccagaaagaggcagccaaacactgtattgaaaaattcagtgcccctgatgacaccc 39465

                                                                         
Query: 237   tggcttccaacgagagcttgtgtgtcatattggcacgccctcgtgcagtccggacaatat 296
             |||||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct: 39464 tggcttcccacgagagcttgagtgtcatatttgcatgccctcgtgcagtccggacaatat 39405

                    
Query: 297   gtcacct 303
             |||||||
Sbjct: 39404 gtcacct 39398



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 300   acctccaaaatctttggcttgaatctattatcaagcataacatcaacgccataaatggcc 359
             |||||||||||||| || |||||| ||||||||||||| |||||||| ||||| || |||
Sbjct: 38915 acctccaaaatcttcggattgaatttattatcaagcatgacatcaaccccatagatagcc 38856

               
Query: 360   ct 361
             ||
Sbjct: 38855 ct 38854



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 76/91 (83%), Gaps = 1/91 (1%)
 Strand = Plus / Minus

                                                                         
Query: 177   tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 236
             ||||| |||||||||||||| |||||   ||||||||| |||||||| ||||| |   ||
Sbjct: 46409 tcgtccagaaagaggcagccgaacacaaagttgaaaaattcactgcccttgat-gacacc 46351

                                            
Query: 237   tggcttccaacgagagcttgtgtgtcatatt 267
             |||||||| ||||| ||||| || |||||||
Sbjct: 46350 tggcttcccacgagcgcttgagtatcatatt 46320
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>gb|AY109909.1| Zea mays CL23422_1 mRNA sequence
          Length = 920

 Score =  125 bits (63), Expect = 1e-25
 Identities = 159/193 (82%)
 Strand = Plus / Plus

                                                                       
Query: 177 tcgtcgagaaagaggcagccaaacaccgtgttgaaaaaatcactgcctttgatggggccc 236
           ||||| |||||||||||||||||||||| ||||      |||| |||| ||||||   ||
Sbjct: 274 tcgtcaagaaagaggcagccaaacaccgagttgnnnnnntcacggcctctgatggtatcc 333

                                                                       
Query: 237 tggcttccaacgagagcttgtgtgtcatattggcacgccctcgtgcagtccggacaatat 296
           |||||||| || |||||||| |||||||| | ||| ||||||  |||||| ||||| |||
Sbjct: 334 tggcttcctaccagagcttgcgtgtcatacttgcatgccctcccgcagtctggacagtat 393

                                                                       
Query: 297 gtcacctccaaaatctttggcttgaatctattatcaagcataacatcaacgccataaatg 356
           |||||||| |||| |||||| |||||||| || |||||||||| ||| || || || |||
Sbjct: 394 gtcacctctaaaacctttggtttgaatctgttgtcaagcataatatctacaccgtagatg 453

                        
Query: 357 gccctgcagaatg 369
           |||||| ||||||
Sbjct: 454 gccctggagaatg 466
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>ref|NM_106404.3| Arabidopsis thaliana protein binding / tubulin-tyrosine ligase
            AT1G77550 mRNA, complete cds
          Length = 2755

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  tgtcatattggcacgccctcgtgcagtccggacaatatgtcacctccaaaatctttggct 318
            ||||||||| ||| |||| | |||| || ||||| ||||| ||||||||||| |||||||
Sbjct: 2464 tgtcatatttgcaagcccgcatgcaatcaggacagtatgtaacctccaaaatttttggct 2405
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>gb|BT014678.1| Arabidopsis thaliana At1g77550 gene, complete cds
          Length = 2568

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  tgtcatattggcacgccctcgtgcagtccggacaatatgtcacctccaaaatctttggct 318
            ||||||||| ||| |||| | |||| || ||||| ||||| ||||||||||| |||||||
Sbjct: 2464 tgtcatatttgcaagcccgcatgcaatcaggacagtatgtaacctccaaaatttttggct 2405
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>gb|AC141846.3| Homo sapiens chromosome 16 clone CTB-55P19, complete sequence
          Length = 261450

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 306   aaaatctttggcttgaatcta 326
             |||||||||||||||||||||
Sbjct: 64053 aaaatctttggcttgaatcta 64033
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>gb|AC083797.16| Homo sapiens 3 BAC RP11-114A6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157113

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 293   atatgtcacctccaaaatctt 313
             |||||||||||||||||||||
Sbjct: 10348 atatgtcacctccaaaatctt 10328
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>gb|AC092721.2| Homo sapiens chromosome 16 clone RP11-514P19, complete sequence
          Length = 201382

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 306   aaaatctttggcttgaatcta 326
             |||||||||||||||||||||
Sbjct: 25813 aaaatctttggcttgaatcta 25793
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>gb|AC023820.6| Homo sapiens chromosome 16 clone RP11-1103K14, complete sequence
          Length = 133537

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 306   aaaatctttggcttgaatcta 326
             |||||||||||||||||||||
Sbjct: 59559 aaaatctttggcttgaatcta 59539
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>gb|AC130528.4| Mus musculus BAC clone RP23-122M14 from chromosome 6, complete
            sequence
          Length = 208738

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  atatgtcacctccaaaatct 312
            ||||||||||||||||||||
Sbjct: 9523 atatgtcacctccaaaatct 9504
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>ref|XM_757192.1| Ustilago maydis 521 hypothetical protein (UM06138.1) partial mRNA
          Length = 1917

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  gaggcagccaaacaccgtgt 207
            ||||||||||||||||||||
Sbjct: 1764 gaggcagccaaacaccgtgt 1745
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>gb|AC107769.7| Mus musculus chromosome 16, clone RP23-130N20, complete sequence
          Length = 192682

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aagcttcactcacaatatca 25
             ||||||||||||||||||||
Sbjct: 93186 aagcttcactcacaatatca 93167
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>gb|AC109245.11| Mus musculus chromosome 1, clone RP23-344F24, complete sequence
          Length = 206211

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   gagaaagaggcagccaaaca 201
             ||||||||||||||||||||
Sbjct: 53357 gagaaagaggcagccaaaca 53338
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>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence
          Length = 197295

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     caacatccctaatccatctc 106
              ||||||||||||||||||||
Sbjct: 190841 caacatccctaatccatctc 190822
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>gb|AF463747.1| Mus musculus strain C57BL/6J cytokine gene cluster, partial sequence
          Length = 6926

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  gagaaagaggcagccaaaca 201
            ||||||||||||||||||||
Sbjct: 2153 gagaaagaggcagccaaaca 2134
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>gb|AC122769.11| Mus musculus chromosome 15, clone RP24-153A12, complete sequence
          Length = 150945

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   aaaaatcactgcctttgatg 230
             ||||||||||||||||||||
Sbjct: 92556 aaaaatcactgcctttgatg 92575
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>gb|AC155279.5| Mus musculus 6 BAC RP24-85A3 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 201663

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   atatgtcacctccaaaatct 312
             ||||||||||||||||||||
Sbjct: 47322 atatgtcacctccaaaatct 47341


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,870,459
Number of Sequences: 3902068
Number of extensions: 2870459
Number of successful extensions: 51274
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51217
Number of HSP's gapped (non-prelim): 57
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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