>gb|AC005885.1| Homo sapiens 12q24.2 PAC RPCI5-1135M4 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 84780

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 13    gtctttatatatttagcattttt 35
             |||||||||||||||||||||||
Sbjct: 22255 gtctttatatatttagcattttt 22233

>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds
          Length = 3422

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 158  ttattccatctcctaccgtccta 180
            |||||||||||||||||||||||
Sbjct: 3238 ttattccatctcctaccgtccta 3216

>emb|CT025556.12| Mouse DNA sequence from clone RP24-91G8 on chromosome 13, complete
             sequence
          Length = 225239

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 12    agtctttatatatttagcattt 33
             ||||||||||||||||||||||
Sbjct: 67476 agtctttatatatttagcattt 67497

>gb|AC172863.1| Brassica rapa subsp. pekinensis clone KBrB070M24, complete sequence
          Length = 97697

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 12    agtctttatatatttagcattttttg 37
             |||||||||||||||| |||||||||
Sbjct: 59646 agtctttatatatttaacattttttg 59671

>gb|AC099596.6| Mus musculus chromosome 15, clone RP23-26P23, complete sequence
          Length = 210022

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      tttataagtctttatatattt 26
              |||||||||||||||||||||
Sbjct: 118084 tttataagtctttatatattt 118064

>emb|AL162419.34| Human DNA sequence from clone RP11-358M14 on chromosome 9 Contains the 5'
              end of a variant of a novel gene (FLJ90578) and a CpG
              island, complete sequence
          Length = 174535

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 90     catcttaattgcttatttaat 110
              |||||||||||||||||||||
Sbjct: 122288 catcttaattgcttatttaat 122308

>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13
             Contains STS and GSSs, complete sequence
          Length = 137739

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 266   acatctttggcatgtctttcc 286
             |||||||||||||||||||||
Sbjct: 48566 acatctttggcatgtctttcc 48546

>emb|BX914217.19| Zebrafish DNA sequence from clone DKEY-175H14 in linkage group 18,
              complete sequence
          Length = 133981

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     tttatatatttagcatttttt 36
              |||||||||||||||||||||
Sbjct: 118169 tttatatatttagcatttttt 118189

>dbj|AK086249.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930016E21 product:unclassifiable, full
           insert sequence
          Length = 2158

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 6   tttataagtctttatatattt 26
           |||||||||||||||||||||
Sbjct: 482 tttataagtctttatatattt 462

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 282     tttccatccaccttcttcgtt 302
               |||||||||||||||||||||
Sbjct: 9757635 tttccatccaccttcttcgtt 9757615

>dbj|AP005863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0040N23
          Length = 101061

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 282   tttccatccaccttcttcgtt 302
             |||||||||||||||||||||
Sbjct: 30054 tttccatccaccttcttcgtt 30034

>emb|CR974469.7| Zebrafish DNA sequence from clone CH73-64N5 in linkage group 22,
             complete sequence
          Length = 105360

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    tctttatatatttagcatttt 34
             |||||||||||||||||||||
Sbjct: 10162 tctttatatatttagcatttt 10142

>gb|AC089994.2| Felis catus clone RP86-181L4, complete sequence
          Length = 142512

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   aacagaaaaagaaaacagcc 212
             ||||||||||||||||||||
Sbjct: 34995 aacagaaaaagaaaacagcc 35014

>gb|AC112143.5| Mus musculus BAC clone RP23-29E2 from chromosome 2, complete sequence
          Length = 205920

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    tgtctttccatccaccttct 297
              ||||||||||||||||||||
Sbjct: 153552 tgtctttccatccaccttct 153571

>gb|AC120138.9| Mus musculus chromosome 1, clone RP23-283D3, complete sequence
          Length = 216381

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tttatatatttagcattttt 35
              ||||||||||||||||||||
Sbjct: 162635 tttatatatttagcattttt 162616

>emb|AL391817.18| Human DNA sequence from clone RP11-91B9 on chromosome 1 Contains the
             PRELP gene for proline arginine-rich end leucine-rich
             repeat protein and the OPTC gene for opticin, complete
             sequence
          Length = 162436

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   cagaaaaagaaaacagccag 214
             ||||||||||||||||||||
Sbjct: 84244 cagaaaaagaaaacagccag 84225

>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains the
             gene for calcium/calmodulin-dependent protein kinase II
             (CaMKIINalpha), the gene for a novel protein (FLJ12875), a
              ribosomal protein S4 X-linked (RPS4X) pseudogene, the CDA
             gene for cytidine deaminase, the PINK1 gene for PTEN
             induced putative kinase 1, a novel gene (FLJ00387), the
             DDOST gene for dolichyl-diphosphooligosaccharide-protein
             glycosyltransferase and the 3' end of the KIF17 gene for
             kinesin family member 17, complete sequence
          Length = 195076

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   aaaaagaaaacagccagcaacaac 221
             ||||||||||||||||||| ||||
Sbjct: 58562 aaaaagaaaacagccagcaccaac 58585

>emb|AL354798.13| Human DNA sequence from clone RP11-756A22 on chromosome 13 Contains the
              3' end of a novel gene, the CENJP gene for centromere
              protein J (LAP, CPAP, LIP1, BM032), 2 novel genes, a
              pseudogene similar to part of solute carrier family 25
              (mitochondrial carrier; ornithine transporter) member 15
              (SLC25A15), a TPTE and PTEN homologous inositol lipid
              phosphatase (TPIP) pseudogene, a 60S ribisomal protein L34
              (RPL34) pseudogene and 2 CpG islands, complete sequence
          Length = 167319

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    aacagaaaaagaaaacagcc 212
              ||||||||||||||||||||
Sbjct: 131042 aacagaaaaagaaaacagcc 131061

>emb|AL136305.14| Human DNA sequence from clone RP1-259A10 on chromosome 6p22.1-23
             Contains the gene for an ssDNA binding protein and a CpG
             island, complete sequence
          Length = 150520

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 1     aaccctttataagtctttatatatttag 28
             |||| ||| |||||||||||||||||||
Sbjct: 54958 aaccatttgtaagtctttatatatttag 54931

>gb|AC158151.4| Mus musculus chromosome 1, clone RP24-315B17, complete sequence
          Length = 184935

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tttatatatttagcattttt 35
              ||||||||||||||||||||
Sbjct: 155219 tttatatatttagcattttt 155238

>gb|AC133796.2| Homo sapiens 3 BAC RP11-10I2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125170

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ctttataagtctttatatat 24
             ||||||||||||||||||||
Sbjct: 38145 ctttataagtctttatatat 38126

>gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, complete sequence
          Length = 183097

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   agccagcaacaaccaacaac 228
             ||||||||||||||||||||
Sbjct: 36825 agccagcaacaaccaacaac 36844

>emb|CR388403.8| Zebrafish DNA sequence from clone CH211-153C18 in linkage group 2,
             complete sequence
          Length = 159100

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   tttccatccaccttcttcgt 301
             ||||||||||||||||||||
Sbjct: 74413 tttccatccaccttcttcgt 74394

>gb|AC091554.5| Homo sapiens chromosome 8, clone RP11-155P23, complete sequence
          Length = 149318

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    agccagcaacaaccaacaac 228
              ||||||||||||||||||||
Sbjct: 101530 agccagcaacaaccaacaac 101549

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 16      tttatatatttagcattttttggg 39
               ||||||||||||| ||||||||||
Sbjct: 9511200 tttatatatttaggattttttggg 9511177

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 16       tttatatatttagcattttttggg 39
                ||||||||||||| ||||||||||
Sbjct: 20195463 tttatatatttaggattttttggg 20195440

>gb|AC008750.9| Homo sapiens chromosome 19 clone CTD-2616J11, complete sequence
          Length = 143045

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tatatatttagcattttttg 37
             ||||||||||||||||||||
Sbjct: 16769 tatatatttagcattttttg 16788

>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence
          Length = 163597

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 281    ctttccatccaccttcttcgttca 304
              ||||||||||||||||||| ||||
Sbjct: 138198 ctttccatccaccttcttctttca 138221

>gb|AC068874.21| Homo sapiens chromosome 17, clone RP11-399J11, complete sequence
          Length = 174914

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 281    ctttccatccaccttcttcgttca 304
              ||||||||||||||||||| ||||
Sbjct: 165479 ctttccatccaccttcttctttca 165456

>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0007G12
          Length = 111819

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    tttatatatttagcattttttggg 39
             ||||||||||||| ||||||||||
Sbjct: 61463 tttatatatttaggattttttggg 61440

>dbj|AP005466.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OJ1212_H09
          Length = 129040

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 16   tttatatatttagcattttttggg 39
            ||||||||||||| ||||||||||
Sbjct: 8973 tttatatatttaggattttttggg 8950

>dbj|AP006465.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1059D01
          Length = 158792

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    tttatatatttagcattttttggg 39
             ||||||||||||| ||||||||||
Sbjct: 18930 tttatatatttaggattttttggg 18907

>dbj|AP006447.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1100H02
          Length = 128773

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    tttatatatttagcattttttggg 39
             ||||||||||||| ||||||||||
Sbjct: 93186 tttatatatttaggattttttggg 93163

>emb|AL928537.12| Mouse DNA sequence from clone RP23-236E7 on chromosome 2, complete
            sequence
          Length = 190808

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  tgtctttccatccaccttct 297
            ||||||||||||||||||||
Sbjct: 4345 tgtctttccatccaccttct 4364

>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 279     gtctttccatccaccttctt 298
               ||||||||||||||||||||
Sbjct: 1407362 gtctttccatccaccttctt 1407343

>gb|AC133110.2| Homo sapiens BAC clone RP11-761N10 from 4, complete sequence
          Length = 59902

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   agaaaaagaaaacagccagc 215
             ||||||||||||||||||||
Sbjct: 41012 agaaaaagaaaacagccagc 41031

>gb|M91082.1|CULLINERTD Culex pipiens LINE repeat (Juan-C retroposon) encoding DNA-binding
           protein and reverse transcriptase genes, complete cds
          Length = 4679

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 193 aacagaaaaagaaaacagcc 212
           ||||||||||||||||||||
Sbjct: 426 aacagaaaaagaaaacagcc 445


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,739,361
Number of Sequences: 3902068
Number of extensions: 3739361
Number of successful extensions: 86108
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85945
Number of HSP's gapped (non-prelim): 163
length of query: 310
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 288
effective length of database: 17,147,199,772
effective search space: 4938393534336
effective search space used: 4938393534336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)