ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN363_HUMAN (Q96PM5) RING finger and CHY zinc finger domain-cont... 29 2.6
2ZN363_MOUSE (Q9CR50) RING finger and CHY zinc finger domain-cont... 29 3.4
3VG12_SHV21 (P24915) Hypothetical gene 12 protein 28 4.4
4V55B_HHV7J (P52518) Hypothetical protein U55B 28 5.8
5V082_ASFB7 (P18557) V82 protein precursor 28 5.8
6MTR1A_CHICK (P49285) Melatonin receptor type 1A (MEL-1A-R) (CKA) 28 7.6
7SYR_BUCBP (P59483) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 28 7.6
8SYR_WIGBR (Q8D372) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 27 9.9
9VATA_ARATH (O23654) Vacuolar ATP synthase catalytic subunit A (E... 27 9.9
10SHARK_DROME (Q24145) Tyrosine-protein kinase shark (EC 2.7.10.2) 27 9.9
11V121_ASFL5 (P26705) LIS 121-1 protein precursor 27 9.9

>ZN363_HUMAN (Q96PM5) RING finger and CHY zinc finger domain-containing protein|
           1 (Zinc finger protein 363) (CH-rich-interacting match
           with PLAG1) (Androgen receptor N-terminal-interacting
           protein)
          Length = 261

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 267 KRQMHCAAVGSCMCFSAFHSFFCLD-NICCKMNVMLYCKSIGRATARRVVPVLQENLTCG 91
           K+Q HC   G C        F CL  N+C  MN+    K I    +R+  P+  E++   
Sbjct: 97  KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCI-ENVSRQNCPICLEDIHTS 155

Query: 90  IVIA 79
            V+A
Sbjct: 156 RVVA 159



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>ZN363_MOUSE (Q9CR50) RING finger and CHY zinc finger domain-containing protein|
           1 (Zinc finger protein 363) (CH-rich-interacting match
           with PLAG1) (Androgen receptor N-terminal-interacting
           protein)
          Length = 261

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 267 KRQMHCAAVGSCMCFSAFHSFFCLD-NICCKMNVMLYCKSIGRATARRVVPVLQENLTCG 91
           KRQ HC + G C        F CL  N+C   N+    K I    +R+  P+  E++   
Sbjct: 97  KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI-ENVSRQNCPICLEDIHTS 155

Query: 90  IVIA 79
            V+A
Sbjct: 156 RVVA 159



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>VG12_SHV21 (P24915) Hypothetical gene 12 protein|
          Length = 169

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -3

Query: 282 SC*C*KRQMHCAAVGSCMCFSAFHSFFCLDNICCKMNVMLYCKSIGRATARRVVPVLQE 106
           +C C  R  H        CF + H  FC      K  +M+ C S+ + ++    PVL++
Sbjct: 22  ACDCPSRVHHTCLQSHIQCFKSSHCTFCEK----KYKIMVMCNSLKKCSS----PVLEQ 72



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>V55B_HHV7J (P52518) Hypothetical protein U55B|
          Length = 430

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = +3

Query: 96  K*GFPEELVPPCVLWLYLSTYSTALHSFYNKCCPSKRKNERPKNTYMIL------QLHNA 257
           K GF  E++P        +  S  +H  Y K C  KRK +      M+       +LH  
Sbjct: 243 KLGFVNEIIP--------NEISLTVHMHYFKICSDKRKIDVFFQDTMLFDEGETKKLHFK 294

Query: 258 FAFFSINKNHVLI--PRAEIQS 317
             F++ N N + +  P +++QS
Sbjct: 295 GTFYNFNANALYVPDPNSKVQS 316



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>V082_ASFB7 (P18557) V82 protein precursor|
          Length = 82

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 19  CETIQLLFFCWDIMNSMILDCYNNTTSEVFLKNWYHPACCGSTY 150
           C  ++   FCWD  N + ++   NTT    L+N Y   C  S +
Sbjct: 39  CTYMECCQFCWDCQNGLCVNKLGNTT---ILENEYVHPCIVSRW 79



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>MTR1A_CHICK (P49285) Melatonin receptor type 1A (MEL-1A-R) (CKA)|
          Length = 353

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +3

Query: 108 PEELVPPCVLWLYLSTYSTALHSFYNKCCPS-----KRKNERPKNTYMILQLHNAFAFFS 272
           PE ++P    WL++S+Y  A   ++N C  +       +N R +   +++    A AFF 
Sbjct: 268 PETIIPRIPEWLFVSSYYMA---YFNSCLNAIIYGLLNQNFRREYKKIVVSFCTAKAFFQ 324

Query: 273 INKN 284
            + N
Sbjct: 325 DSSN 328



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>SYR_BUCBP (P59483) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 578

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 126 PCVLWLYLSTYSTALHSFYNKCCPSKRKNERPKNTYMILQLHNA 257
           P ++  YL   S     FY KC   K KN + +   ++L L  A
Sbjct: 517 PHIICKYLYELSKIFSKFYEKCSIYKSKNTKIRKNRLLLSLLTA 560



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>SYR_WIGBR (Q8D372) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 576

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 114 ELVPPCVLWLYLSTYSTALHSFYNKCCPSKRKNERPKNTYMILQL 248
           +L  P +L  YL   S     FY  C   K K E  KN+ + L +
Sbjct: 511 KLGTPHILCNYLYDLSKTFSVFYENCSIIKTKEESVKNSRLFLSI 555



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>VATA_ARATH (O23654) Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)|
           (V-ATPase subunit A) (Vacuolar proton pump alpha
           subunit) (V-ATPase 69 kDa subunit)
          Length = 623

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 126 PCVLWLY-LSTYSTALHSFYNKCCP 197
           P V WL   S YSTAL SFY K  P
Sbjct: 449 PSVNWLISYSKYSTALESFYEKFDP 473



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>SHARK_DROME (Q24145) Tyrosine-protein kinase shark (EC 2.7.10.2)|
          Length = 939

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 58  MNSMILDCYNNTTSEVFLKNWYHPACCGSTYRLTVQHYIH 177
           M   ILD  +  T+   LK W     CG  Y L  QH++H
Sbjct: 749 MLQYILDHGHEITANAELKVWASQIACGMHY-LESQHFVH 787



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>V121_ASFL5 (P26705) LIS 121-1 protein precursor|
          Length = 121

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 19  CETIQLLFFCWDIMNSMILDCYNNTTSEVFLKNWYHPACCGSTY 150
           C  ++   FCWD  N + +    NTT    L+N Y   C  S +
Sbjct: 39  CTYMECCQFCWDCQNGLCVHKLGNTT---ILENEYVHPCIVSRW 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,682,624
Number of Sequences: 219361
Number of extensions: 783273
Number of successful extensions: 1925
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1925
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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