>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078f20, complete sequence
          Length = 151042

 Score =  121 bits (61), Expect = 1e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                         
Query: 168   gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 227
             |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 87657 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 87598

                              
Query: 228   ccaggtgctttgtcctc 244
             |||||||| ||||||||
Sbjct: 87597 ccaggtgccttgtcctc 87581

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 1e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 168      gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 227
                |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 16347222 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 16347163

                                 
Query: 228      ccaggtgctttgtcctc 244
                |||||||| ||||||||
Sbjct: 16347162 ccaggtgccttgtcctc 16347146

>dbj|AK058672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H04, full
            insert sequence
          Length = 2175

 Score =  121 bits (61), Expect = 1e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                        
Query: 168  gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 227
            |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 1731 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 1672

                             
Query: 228  ccaggtgctttgtcctc 244
            |||||||| ||||||||
Sbjct: 1671 ccaggtgccttgtcctc 1655

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 1e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 168      gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 227
                |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 16437201 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 16437142

                                 
Query: 228      ccaggtgctttgtcctc 244
                |||||||| ||||||||
Sbjct: 16437141 ccaggtgccttgtcctc 16437125

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  109 bits (55), Expect = 4e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                            
Query: 164      tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 223
                ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 13860418 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 13860477

                                           
Query: 224      gccaccaggtgctttgtcctccaccaa 250
                |||||||||||| ||||| || |||||
Sbjct: 13860478 gccaccaggtgccttgtcttcgaccaa 13860504

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  109 bits (55), Expect = 4e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                            
Query: 164      tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 223
                ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 13814698 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 13814757

                                           
Query: 224      gccaccaggtgctttgtcctccaccaa 250
                |||||||||||| ||||| || |||||
Sbjct: 13814758 gccaccaggtgccttgtcttcgaccaa 13814784

>emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial sequence from PAC P0185F07 of
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 50021

 Score =  109 bits (55), Expect = 4e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                         
Query: 164   tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 223
             ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 29221 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 29280

                                        
Query: 224   gccaccaggtgctttgtcctccaccaa 250
             |||||||||||| ||||| || |||||
Sbjct: 29281 gccaccaggtgccttgtcttcgaccaa 29307

>gb|BT016644.1| Zea mays clone Contig477 mRNA sequence
          Length = 1961

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                        
Query: 164  tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 223
            ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 1302 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 1243

                                    
Query: 224  gccaccaggtgctttgtcctccac 247
            | | ||||| || |||||||||||
Sbjct: 1242 gacgccaggcgccttgtcctccac 1219

>gb|BT016818.1| Zea mays clone Contig651 mRNA sequence
          Length = 686

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 164 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 223
           ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 377 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 436

                                   
Query: 224 gccaccaggtgctttgtcctccac 247
           | | ||||| || |||||||||||
Sbjct: 437 gacgccaggcgccttgtcctccac 460

>gb|AY107397.1| Zea mays PCO076624 mRNA sequence
          Length = 2256

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                        
Query: 164  tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 223
            ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 1839 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 1780

                                    
Query: 224  gccaccaggtgctttgtcctccac 247
            | | ||||| || |||||||||||
Sbjct: 1779 gacgccaggcgccttgtcctccac 1756

>gb|BT016902.1| Zea mays clone Contig735 mRNA sequence
          Length = 987

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                       
Query: 164 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 223
           ||||||||||||||| ||||| |||||||| ||||| ||||| |||||| | ||||| | 
Sbjct: 438 tcaggtcatcttgctttggatctgcctgtggacatgcacgagaaactcctcgtaggagaa 497

                                
Query: 224 gccaccaggtgctttgtcctc 244
           | | |||||||| ||||||||
Sbjct: 498 gacgccaggtgccttgtcctc 518

>gb|AY105862.1| Zea mays PCO076623 mRNA sequence
          Length = 924

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                       
Query: 164 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 223
           ||||||||||||||| ||||| |||||||| ||||| ||||| |||||| | ||||| | 
Sbjct: 830 tcaggtcatcttgctttggatctgcctgtggacatgcacgagaaactcctcgtaggagaa 771

                                
Query: 224 gccaccaggtgctttgtcctc 244
           | | |||||||| ||||||||
Sbjct: 770 gacgccaggtgccttgtcctc 750

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                                  
Query: 47       gtaattaagtacgagtacaaactcttttcagaaa 80
                |||||||||||| |||||||||||||||| ||||
Sbjct: 16427078 gtaattaagtac-agtacaaactcttttctgaaa 16427046

>gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genomic sequence, complete
             sequence
          Length = 146775

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Plus

                                               
Query: 47    gtaattaagtacgagtacaaactcttttcagaaa 80
             |||||||||||| |||||||||||||||| ||||
Sbjct: 40132 gtaattaagtac-agtacaaactcttttctgaaa 40164

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                                  
Query: 47       gtaattaagtacgagtacaaactcttttcagaaa 80
                |||||||||||| |||||||||||||||| ||||
Sbjct: 16420711 gtaattaagtac-agtacaaactcttttctgaaa 16420679

>gb|AF270379.1|AF270379 Staphylococcus epidermidis strain SR1 clone step.4033c10 genomic
          sequence
          Length = 1609

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 ctttatatgaaaatctcagta 38
          |||||||||||||||||||||
Sbjct: 16 ctttatatgaaaatctcagta 36

>gb|AF270098.1|AF270098 Staphylococcus epidermidis strain SR1 clone step.1048g07 genomic
            sequence
          Length = 3379

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 18   ctttatatgaaaatctcagta 38
            |||||||||||||||||||||
Sbjct: 2988 ctttatatgaaaatctcagta 2968

>gb|AF269737.1|AF269737 Staphylococcus epidermidis strain SR1 clone step.1020g09 genomic
           sequence
          Length = 2858

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 18  ctttatatgaaaatctcagta 38
           |||||||||||||||||||||
Sbjct: 411 ctttatatgaaaatctcagta 431

>gb|AC123683.6| Mus musculus chromosome 9, clone RP23-296I6, complete sequence
          Length = 189100

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    agtacaaacagggtaattaa 54
             ||||||||||||||||||||
Sbjct: 57663 agtacaaacagggtaattaa 57682

>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15,
              complete sequence
          Length = 179357

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 156    atgaagcttcaggtcatcttgctc 179
              |||||||||||| |||||||||||
Sbjct: 135763 atgaagcttcagttcatcttgctc 135786

>gb|AC110823.5| Mus musculus BAC clone RP24-366C12 from chromosome 7, complete sequence
          Length = 141116

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    aaagaaaaacggtccattta 97
             ||||||||||||||||||||
Sbjct: 42222 aaagaaaaacggtccattta 42203

>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence
          Length = 221903

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    ccaaaatatcacaccaatga 159
              ||||||||||||||||||||
Sbjct: 103131 ccaaaatatcacaccaatga 103112

>emb|AL672177.9| Mouse DNA sequence from clone RP23-292D8 on chromosome 11 Contains the 3'
              end of the Gria1 gene for glutamate receptor, ionotropic,
              AMPA1 (alpha 1), complete sequence
          Length = 157692

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 14     gagtctttatatgaaaatctcagt 37
              ||||| ||||||||||||||||||
Sbjct: 130476 gagtcgttatatgaaaatctcagt 130453

>emb|CR356236.12| Zebrafish DNA sequence from clone CH211-251P4 in linkage group 13,
             complete sequence
          Length = 171465

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    caaactcttttcagaaagaa 83
             ||||||||||||||||||||
Sbjct: 47074 caaactcttttcagaaagaa 47055

>dbj|AK134256.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
           enriched library, clone:5930410P22
           product:unclassifiable, full insert sequence
          Length = 2085

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  agtacaaacagggtaattaa 54
           ||||||||||||||||||||
Sbjct: 488 agtacaaacagggtaattaa 507

>dbj|AB179423.1| Macaca fascicularis testis cDNA clone: QtsA-19777, similar to human
            v-raf murine sarcoma viral oncogene homolog B1 (BRAF),
            mRNA, RefSeq: NM_004333.2
          Length = 2849

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 227  accaggtgctttgtcctcca 246
            ||||||||||||||||||||
Sbjct: 2314 accaggtgctttgtcctcca 2333

>dbj|AK034986.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430070G17 product:unclassifiable, full insert
           sequence
          Length = 2255

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 71  ttttcagaaagaaaaacggtccat 94
           |||||||||||||||| |||||||
Sbjct: 396 ttttcagaaagaaaaatggtccat 419

>emb|AL928805.18| Mouse DNA sequence from clone RP23-291H20 on chromosome 2, complete
              sequence
          Length = 192688

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     gagtacaaactcttttcaga 78
              ||||||||||||||||||||
Sbjct: 141397 gagtacaaactcttttcaga 141416

>gb|AC138719.4| Mus musculus BAC clone RP23-178O8 from 10, complete sequence
          Length = 183689

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 71     ttttcagaaagaaaaacggtccat 94
              |||||||||||||||| |||||||
Sbjct: 109345 ttttcagaaagaaaaatggtccat 109368

>gb|AC150312.2| Mus musculus BAC clone RP23-336M16 from 7, complete sequence
          Length = 207429

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     aaagaaaaacggtccattta 97
              ||||||||||||||||||||
Sbjct: 197196 aaagaaaaacggtccattta 197215

>gb|AC148975.3| Mus musculus BAC clone RP23-398E10 from 7, complete sequence
          Length = 209924

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aaagaaaaacggtccattta 97
             ||||||||||||||||||||
Sbjct: 31014 aaagaaaaacggtccattta 31033


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,814,694
Number of Sequences: 3902068
Number of extensions: 2814694
Number of successful extensions: 65037
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 64934
Number of HSP's gapped (non-prelim): 106
length of query: 252
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 230
effective length of database: 17,147,199,772
effective search space: 3943855947560
effective search space used: 3943855947560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)