ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY903394.1| Memecylon thouarsianum clone 3.7 glyceraldehyde 3... 52 0.001
2gb|AY903393.1| Memecylon thouarsianum clone 3.6 glyceraldehyde 3... 52 0.001
3gb|AY903391.1| Memecylon roseum clone 2.18 glyceraldehyde 3-phos... 52 0.001
4gb|AY903390.1| Memecylon roseum clone 2.17 glyceraldehyde 3-phos... 52 0.001
5gb|AY903389.1| Memecylon lateriflorum clone 1.8 glyceraldehyde 3... 52 0.001
6gb|AY903388.1| Memecylon lateriflorum clone 1.6 glyceraldehyde 3... 52 0.001
7gb|AY903383.1| Lijndenia procteri clone 5.4 glyceraldehyde 3-pho... 52 0.001
8gb|AY903381.1| Lijndenia danguyana clone 2.2 glyceraldehyde 3-ph... 52 0.001
9gb|AY903396.1| Mouriri sagotiana clone 6.1 glyceraldehyde 3-phos... 50 0.005
10gb|AY903382.1| Lijndenia procteri clone 5.3 glyceraldehyde 3-pho... 48 0.021
11gb|AY903380.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.... 48 0.021
12gb|AY903379.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.... 48 0.021
13gb|AY903378.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.... 48 0.021
14gb|AC133897.15| Mus musculus chromosome 5, clone RP24-357G2, com... 46 0.082
15gb|AY903410.1| Warneckea sansibarica clone 1.3 glyceraldehyde 3-... 44 0.32
16gb|AY903409.1| Warneckea sansibarica clone 1.2 glyceraldehyde 3-... 44 0.32
17gb|AY903408.1| Warneckea sansibarica clone 1.1 glyceraldehyde 3-... 44 0.32
18gb|AY903407.1| Warneckea sansibarica clone 3.5 glyceraldehyde 3-... 44 0.32
19gb|AY903406.1| Warneckea membranifolia clone 1.3 glyceraldehyde ... 44 0.32
20gb|AY903405.1| Warneckea membranifolia clone 1.1 glyceraldehyde ... 44 0.32
21gb|AY903402.1| Warneckea fascicularis var. mangrovensis clone 2.... 44 0.32
22gb|AY903401.1| Warneckea fascicularis var. mangrovensis clone 2.... 44 0.32
23gb|AY903400.1| Warneckea fascicularis var. mangrovensis clone 2.... 44 0.32
24gb|AY903398.1| Spathandra blakeoides clone 5.3 glyceraldehyde 3-... 44 0.32
25gb|AY903397.1| Spathandra blakeoides clone 5.2 glyceraldehyde 3-... 44 0.32
26gb|AY903392.1| Memecylon thouarsianum clone 3.5 glyceraldehyde 3... 44 0.32
27gb|AY903395.1| Mouriri dumetosa clone 5.5 glyceraldehyde 3-phosp... 42 1.3
28gb|AC134384.6| Mus musculus strain C57BL/6J clone rp23-393d21, c... 40 5.1
29gb|AC134383.11| Mus musculus strain C57BL/6J clone rp23-348k4, c... 40 5.1
30gb|AY903399.1| Votomita guianensis clone 3.1 glyceraldehyde 3-ph... 40 5.1
31emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; se... 40 5.1
32gb|AC008019.60| Mus musculus strain 129S6/SvEvTac chromosome 16 ... 40 5.1
33gb|AC092501.2| Homo sapiens chromosome 3 clone RP11-139C14, comp... 40 5.1
34gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, compl... 40 5.1
35gb|AF124742.1|AF124742 Euprymna scolopes guanine nucleotide-bind... 40 5.1
36emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 i... 40 5.1
37gb|AC083895.21| Mus musculus strain C57BL/6J chromosome 16 clone... 40 5.1

>gb|AY903394.1| Memecylon thouarsianum clone 3.7 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 843

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521



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>gb|AY903393.1| Memecylon thouarsianum clone 3.6 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 844

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521



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>gb|AY903391.1| Memecylon roseum clone 2.18 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 844

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521



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>gb|AY903390.1| Memecylon roseum clone 2.17 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 844

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521



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>gb|AY903389.1| Memecylon lateriflorum clone 1.8 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 847

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521



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>gb|AY903388.1| Memecylon lateriflorum clone 1.6 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 847

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521



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>gb|AY903383.1| Lijndenia procteri clone 5.4 glyceraldehyde 3-phosphate
           dehydrogenase-like (GapC) gene, complete sequence
          Length = 870

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaact 545



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>gb|AY903381.1| Lijndenia danguyana clone 2.2 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 872

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||||||||||||||
Sbjct: 571 aagagtgaccataggcaaatgaaact 546



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>gb|AY903396.1| Mouriri sagotiana clone 6.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 870

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 289 agagtgaccataggcaaatgaaact 313
           |||||||||||||||||||||||||
Sbjct: 568 agagtgaccataggcaaatgaaact 544



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>gb|AY903382.1| Lijndenia procteri clone 5.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 871

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 288 aagagtgaccataggcaaatgaaa 311
           ||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaa 547



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>gb|AY903380.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.3 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 871

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 288 aagagtgaccataggcaaatgaaa 311
           ||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaa 547



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>gb|AY903379.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.2 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 870

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 288 aagagtgaccataggcaaatgaaa 311
           ||||||||||||||||||||||||
Sbjct: 569 aagagtgaccataggcaaatgaaa 546



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>gb|AY903378.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.1 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 871

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 288 aagagtgaccataggcaaatgaaa 311
           ||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaa 547



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>gb|AC133897.15| Mus musculus chromosome 5, clone RP24-357G2, complete sequence
          Length = 177013

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 105   aatattttttctagcaagtacat 127
             |||||||||||||||||||||||
Sbjct: 59494 aatattttttctagcaagtacat 59472



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>gb|AY903410.1| Warneckea sansibarica clone 1.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggcgaatgaaact 545



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>gb|AY903409.1| Warneckea sansibarica clone 1.2 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggcgaatgaaact 545



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>gb|AY903408.1| Warneckea sansibarica clone 1.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggctaatgaaact 545



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>gb|AY903407.1| Warneckea sansibarica clone 3.5 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggcgaatgaaact 545



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>gb|AY903406.1| Warneckea membranifolia clone 1.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 876

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546



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>gb|AY903405.1| Warneckea membranifolia clone 1.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 876

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546



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>gb|AY903402.1| Warneckea fascicularis var. mangrovensis clone 2.5 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 875

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546



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>gb|AY903401.1| Warneckea fascicularis var. mangrovensis clone 2.2 glyceraldehyde
           3-phosphate dehydrogenase-like (GapC) gene, complete
           sequence
          Length = 876

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546



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>gb|AY903400.1| Warneckea fascicularis var. mangrovensis clone 2.1 glyceraldehyde
           3-phosphate dehydrogenase-like (GapC) gene, complete
           sequence
          Length = 874

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||| ||||||||||
Sbjct: 570 aagagtgaccataggaaaatgaaact 545



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>gb|AY903398.1| Spathandra blakeoides clone 5.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 848

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           ||||||||||||||| ||||||||||
Sbjct: 547 aagagtgaccataggtaaatgaaact 522



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>gb|AY903397.1| Spathandra blakeoides clone 5.2 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 848

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 aagagtgaccataggcaaatgaaact 313
           |||||||||| |||||||||||||||
Sbjct: 547 aagagtgaccgtaggcaaatgaaact 522



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>gb|AY903392.1| Memecylon thouarsianum clone 3.5 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 843

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 288 aagagtgaccataggcaaatga 309
           ||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatga 525



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>gb|AY903395.1| Mouriri dumetosa clone 5.5 glyceraldehyde 3-phosphate dehydrogenase
           (GapC) gene, partial cds
          Length = 867

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 288 aagagtgaccataggcaaatgaaac 312
           |||||||||||| ||||||||||||
Sbjct: 567 aagagtgaccatgggcaaatgaaac 543



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>gb|AC134384.6| Mus musculus strain C57BL/6J clone rp23-393d21, complete sequence
          Length = 227620

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ttaagtctggagcagcagag 244
              ||||||||||||||||||||
Sbjct: 153787 ttaagtctggagcagcagag 153768



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>gb|AC134383.11| Mus musculus strain C57BL/6J clone rp23-348k4, complete sequence
          Length = 227587

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ttaagtctggagcagcagag 244
              ||||||||||||||||||||
Sbjct: 153756 ttaagtctggagcagcagag 153737



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>gb|AY903399.1| Votomita guianensis clone 3.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 872

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 tgaccataggcaaatgaaac 312
           ||||||||||||||||||||
Sbjct: 567 tgaccataggcaaatgaaac 548



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>emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; segment 5/5
          Length = 262202

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    taattgaactccagcaattc 75
             ||||||||||||||||||||
Sbjct: 65149 taattgaactccagcaattc 65168



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>gb|AC008019.60| Mus musculus strain 129S6/SvEvTac chromosome 16 clone rp21-519i24,
              complete sequence
          Length = 189707

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    ttaagtctggagcagcagag 244
              ||||||||||||||||||||
Sbjct: 138067 ttaagtctggagcagcagag 138086



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>gb|AC092501.2| Homo sapiens chromosome 3 clone RP11-139C14, complete sequence
          Length = 159331

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    caactaattatgtaggcatg 40
             ||||||||||||||||||||
Sbjct: 73757 caactaattatgtaggcatg 73776



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>gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, complete sequence
          Length = 201243

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     caactaattatgtaggcatg 40
              ||||||||||||||||||||
Sbjct: 168521 caactaattatgtaggcatg 168540



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>gb|AF124742.1|AF124742 Euprymna scolopes guanine nucleotide-binding protein (RACKI) mRNA,
           partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 84  gggttacacaaatcgccacc 103
           ||||||||||||||||||||
Sbjct: 50  gggttacacaaatcgccacc 69



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>emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 in linkage group 7,
           complete sequence
          Length = 145555

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 ctggagcagcagagttcgca 250
           ||||||||||||||||||||
Sbjct: 790 ctggagcagcagagttcgca 809



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>gb|AC083895.21| Mus musculus strain C57BL/6J chromosome 16 clone rp23-294d8, complete
              sequence
          Length = 187658

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ttaagtctggagcagcagag 244
              ||||||||||||||||||||
Sbjct: 153758 ttaagtctggagcagcagag 153739


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,325,655
Number of Sequences: 3902068
Number of extensions: 3325655
Number of successful extensions: 53856
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53812
Number of HSP's gapped (non-prelim): 44
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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