Clone Name | rbastl12d02 |
---|---|
Clone Library Name | barley_pub |
>gb|AY903394.1| Memecylon thouarsianum clone 3.7 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 843 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||||||||||||| Sbjct: 546 aagagtgaccataggcaaatgaaact 521
>gb|AY903393.1| Memecylon thouarsianum clone 3.6 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 844 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||||||||||||| Sbjct: 546 aagagtgaccataggcaaatgaaact 521
>gb|AY903391.1| Memecylon roseum clone 2.18 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 844 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||||||||||||| Sbjct: 546 aagagtgaccataggcaaatgaaact 521
>gb|AY903390.1| Memecylon roseum clone 2.17 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 844 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||||||||||||| Sbjct: 546 aagagtgaccataggcaaatgaaact 521
>gb|AY903389.1| Memecylon lateriflorum clone 1.8 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 847 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||||||||||||| Sbjct: 546 aagagtgaccataggcaaatgaaact 521
>gb|AY903388.1| Memecylon lateriflorum clone 1.6 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 847 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||||||||||||| Sbjct: 546 aagagtgaccataggcaaatgaaact 521
>gb|AY903383.1| Lijndenia procteri clone 5.4 glyceraldehyde 3-phosphate dehydrogenase-like (GapC) gene, complete sequence Length = 870 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||||||||||||| Sbjct: 570 aagagtgaccataggcaaatgaaact 545
>gb|AY903381.1| Lijndenia danguyana clone 2.2 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 872 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||||||||||||| Sbjct: 571 aagagtgaccataggcaaatgaaact 546
>gb|AY903396.1| Mouriri sagotiana clone 6.1 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 870 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 289 agagtgaccataggcaaatgaaact 313 ||||||||||||||||||||||||| Sbjct: 568 agagtgaccataggcaaatgaaact 544
>gb|AY903382.1| Lijndenia procteri clone 5.3 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 871 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaa 311 |||||||||||||||||||||||| Sbjct: 570 aagagtgaccataggcaaatgaaa 547
>gb|AY903380.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.3 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 871 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaa 311 |||||||||||||||||||||||| Sbjct: 570 aagagtgaccataggcaaatgaaa 547
>gb|AY903379.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.2 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 870 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaa 311 |||||||||||||||||||||||| Sbjct: 569 aagagtgaccataggcaaatgaaa 546
>gb|AY903378.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.1 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 871 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaa 311 |||||||||||||||||||||||| Sbjct: 570 aagagtgaccataggcaaatgaaa 547
>gb|AC133897.15| Mus musculus chromosome 5, clone RP24-357G2, complete sequence Length = 177013 Score = 46.1 bits (23), Expect = 0.082 Identities = 23/23 (100%) Strand = Plus / Minus Query: 105 aatattttttctagcaagtacat 127 ||||||||||||||||||||||| Sbjct: 59494 aatattttttctagcaagtacat 59472
>gb|AY903410.1| Warneckea sansibarica clone 1.3 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 861 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||| ||||||||| Sbjct: 570 aagagtgaccataggcgaatgaaact 545
>gb|AY903409.1| Warneckea sansibarica clone 1.2 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 861 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||| ||||||||| Sbjct: 570 aagagtgaccataggcgaatgaaact 545
>gb|AY903408.1| Warneckea sansibarica clone 1.1 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 861 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||| ||||||||| Sbjct: 570 aagagtgaccataggctaatgaaact 545
>gb|AY903407.1| Warneckea sansibarica clone 3.5 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 861 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||||||||| ||||||||| Sbjct: 570 aagagtgaccataggcgaatgaaact 545
>gb|AY903406.1| Warneckea membranifolia clone 1.3 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 876 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 ||||||||||||||| |||||||||| Sbjct: 571 aagagtgaccataggaaaatgaaact 546
>gb|AY903405.1| Warneckea membranifolia clone 1.1 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 876 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 ||||||||||||||| |||||||||| Sbjct: 571 aagagtgaccataggaaaatgaaact 546
>gb|AY903402.1| Warneckea fascicularis var. mangrovensis clone 2.5 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 875 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 ||||||||||||||| |||||||||| Sbjct: 571 aagagtgaccataggaaaatgaaact 546
>gb|AY903401.1| Warneckea fascicularis var. mangrovensis clone 2.2 glyceraldehyde 3-phosphate dehydrogenase-like (GapC) gene, complete sequence Length = 876 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 ||||||||||||||| |||||||||| Sbjct: 571 aagagtgaccataggaaaatgaaact 546
>gb|AY903400.1| Warneckea fascicularis var. mangrovensis clone 2.1 glyceraldehyde 3-phosphate dehydrogenase-like (GapC) gene, complete sequence Length = 874 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 ||||||||||||||| |||||||||| Sbjct: 570 aagagtgaccataggaaaatgaaact 545
>gb|AY903398.1| Spathandra blakeoides clone 5.3 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 848 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 ||||||||||||||| |||||||||| Sbjct: 547 aagagtgaccataggtaaatgaaact 522
>gb|AY903397.1| Spathandra blakeoides clone 5.2 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 848 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaact 313 |||||||||| ||||||||||||||| Sbjct: 547 aagagtgaccgtaggcaaatgaaact 522
>gb|AY903392.1| Memecylon thouarsianum clone 3.5 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 843 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatga 309 |||||||||||||||||||||| Sbjct: 546 aagagtgaccataggcaaatga 525
>gb|AY903395.1| Mouriri dumetosa clone 5.5 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 867 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 aagagtgaccataggcaaatgaaac 312 |||||||||||| |||||||||||| Sbjct: 567 aagagtgaccatgggcaaatgaaac 543
>gb|AC134384.6| Mus musculus strain C57BL/6J clone rp23-393d21, complete sequence Length = 227620 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ttaagtctggagcagcagag 244 |||||||||||||||||||| Sbjct: 153787 ttaagtctggagcagcagag 153768
>gb|AC134383.11| Mus musculus strain C57BL/6J clone rp23-348k4, complete sequence Length = 227587 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ttaagtctggagcagcagag 244 |||||||||||||||||||| Sbjct: 153756 ttaagtctggagcagcagag 153737
>gb|AY903399.1| Votomita guianensis clone 3.1 glyceraldehyde 3-phosphate dehydrogenase (GapC) gene, partial cds Length = 872 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tgaccataggcaaatgaaac 312 |||||||||||||||||||| Sbjct: 567 tgaccataggcaaatgaaac 548
>emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; segment 5/5 Length = 262202 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 taattgaactccagcaattc 75 |||||||||||||||||||| Sbjct: 65149 taattgaactccagcaattc 65168
>gb|AC008019.60| Mus musculus strain 129S6/SvEvTac chromosome 16 clone rp21-519i24, complete sequence Length = 189707 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ttaagtctggagcagcagag 244 |||||||||||||||||||| Sbjct: 138067 ttaagtctggagcagcagag 138086
>gb|AC092501.2| Homo sapiens chromosome 3 clone RP11-139C14, complete sequence Length = 159331 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 caactaattatgtaggcatg 40 |||||||||||||||||||| Sbjct: 73757 caactaattatgtaggcatg 73776
>gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, complete sequence Length = 201243 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 caactaattatgtaggcatg 40 |||||||||||||||||||| Sbjct: 168521 caactaattatgtaggcatg 168540
>gb|AF124742.1|AF124742 Euprymna scolopes guanine nucleotide-binding protein (RACKI) mRNA, partial cds Length = 939 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gggttacacaaatcgccacc 103 |||||||||||||||||||| Sbjct: 50 gggttacacaaatcgccacc 69
>emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 in linkage group 7, complete sequence Length = 145555 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ctggagcagcagagttcgca 250 |||||||||||||||||||| Sbjct: 790 ctggagcagcagagttcgca 809
>gb|AC083895.21| Mus musculus strain C57BL/6J chromosome 16 clone rp23-294d8, complete sequence Length = 187658 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ttaagtctggagcagcagag 244 |||||||||||||||||||| Sbjct: 153758 ttaagtctggagcagcagag 153739 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,325,655 Number of Sequences: 3902068 Number of extensions: 3325655 Number of successful extensions: 53856 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53812 Number of HSP's gapped (non-prelim): 44 length of query: 379 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 357 effective length of database: 17,147,199,772 effective search space: 6121550318604 effective search space used: 6121550318604 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)