ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.071
2dbj|AK060480.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.071
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.071
4emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb... 46 0.071
5emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.071
6emb|AL732568.8| Mouse DNA sequence from clone RP23-469G19 on chr... 44 0.28
7gb|AC152953.1| Mus musculus 10 BAC RP23-403E19 (Roswell Park Can... 42 1.1
8gb|AC160017.2| Mus musculus BAC clone RP23-172C19 from chromosom... 40 4.4
9emb|AL450398.9| Human DNA sequence from clone RP11-202P11 on chr... 40 4.4
10emb|AL031295.1|HS886K2 Human DNA sequence from clone RP5-886K2 o... 40 4.4
11gb|AC068112.5| Homo sapiens chromosome 18, clone RP11-526H11, co... 40 4.4
12gb|AC020908.7| Homo sapiens chromosome 19 clone CTD-2528A14, com... 40 4.4
13gb|AF052857.1|AF052857 Dicentra eximia PISTILLATA homolog DePI-1... 40 4.4
14emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chro... 40 4.4

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 265     taacaggagctctaacgcctatttcca 291
               ||||||||| |||||||||||||||||
Sbjct: 2724991 taacaggagttctaacgcctatttcca 2724965



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>dbj|AK060480.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-G08, full
            insert sequence
          Length = 1436

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 265  taacaggagctctaacgcctatttcca 291
            ||||||||| |||||||||||||||||
Sbjct: 1113 taacaggagttctaacgcctatttcca 1087



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 265     taacaggagctctaacgcctatttcca 291
               ||||||||| |||||||||||||||||
Sbjct: 2724935 taacaggagttctaacgcctatttcca 2724909



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>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145539

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 265    taacaggagctctaacgcctatttcca 291
              ||||||||| |||||||||||||||||
Sbjct: 145456 taacaggagttctaacgcctatttcca 145482



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>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151878

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 265   taacaggagctctaacgcctatttcca 291
             ||||||||| |||||||||||||||||
Sbjct: 93917 taacaggagttctaacgcctatttcca 93891



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>emb|AL732568.8| Mouse DNA sequence from clone RP23-469G19 on chromosome 4, complete
              sequence
          Length = 169474

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 13     aacaaaaagtaccataaaagcatgga 38
              ||||||||||||| ||||||||||||
Sbjct: 140385 aacaaaaagtaccctaaaagcatgga 140410



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>gb|AC152953.1| Mus musculus 10 BAC RP23-403E19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 211343

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 178   actgaactactgaacttaggg 198
             |||||||||||||||||||||
Sbjct: 54803 actgaactactgaacttaggg 54783



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>gb|AC160017.2| Mus musculus BAC clone RP23-172C19 from chromosome 9, complete sequence
          Length = 189417

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   caaacagcactagcagcaac 149
             ||||||||||||||||||||
Sbjct: 77236 caaacagcactagcagcaac 77217



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>emb|AL450398.9| Human DNA sequence from clone RP11-202P11 on chromosome 10 Contains
            the 3'end of a novel gene containing FLJ40604 and
            FLJ40930, complete sequence
          Length = 55063

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  tacctttttgtttaatgact 331
            ||||||||||||||||||||
Sbjct: 2088 tacctttttgtttaatgact 2107



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>emb|AL031295.1|HS886K2 Human DNA sequence from clone RP5-886K2 on chromosome 1p35.1-36.12
             Contains a neuronal thread protein (AD7C-NTP) pseudogene,
             the TCEB3 gene for  transcription elongation factor B
             (SIII), polypeptide 3 (110kDa, elongin A), two novel
             genes, a novel gene (HT014), the LYPLA2  gene for
             lysophospholipase II, the GALE gene for
             UDP-galactose-4-epimerase and the HMGCL gene for
             3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase
             (hydroxymethylglutaricaciduria), complete sequence
          Length = 124001

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ataataacagaagtttggga 74
             ||||||||||||||||||||
Sbjct: 29397 ataataacagaagtttggga 29378



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>gb|AC068112.5| Homo sapiens chromosome 18, clone RP11-526H11, complete sequence
          Length = 165840

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    accaccctacctaccttgaa 241
              ||||||||||||||||||||
Sbjct: 113094 accaccctacctaccttgaa 113075



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>gb|AC020908.7| Homo sapiens chromosome 19 clone CTD-2528A14, complete sequence
          Length = 174034

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 90    ttccaaacatgcagaacagttgag 113
             |||||||||||||||| |||||||
Sbjct: 44313 ttccaaacatgcagaaaagttgag 44290



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>gb|AF052857.1|AF052857 Dicentra eximia PISTILLATA homolog DePI-1 mRNA, partial cds
          Length = 894

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 284 tatttccatagaagttgcccttca 307
           |||||||||||||| |||||||||
Sbjct: 318 tatttccatagaagatgcccttca 341



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>emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chromosome X, complete
             sequence
          Length = 201642

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    caaacatgcagaacagttga 112
             ||||||||||||||||||||
Sbjct: 29543 caaacatgcagaacagttga 29524


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,899,936
Number of Sequences: 3902068
Number of extensions: 2899936
Number of successful extensions: 50521
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50458
Number of HSP's gapped (non-prelim): 63
length of query: 331
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 309
effective length of database: 17,147,199,772
effective search space: 5298484729548
effective search space used: 5298484729548
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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