Clone Name | rbastl12d01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 265 taacaggagctctaacgcctatttcca 291 ||||||||| ||||||||||||||||| Sbjct: 2724991 taacaggagttctaacgcctatttcca 2724965
>dbj|AK060480.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-G08, full insert sequence Length = 1436 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 265 taacaggagctctaacgcctatttcca 291 ||||||||| ||||||||||||||||| Sbjct: 1113 taacaggagttctaacgcctatttcca 1087
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 265 taacaggagctctaacgcctatttcca 291 ||||||||| ||||||||||||||||| Sbjct: 2724935 taacaggagttctaacgcctatttcca 2724909
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Plus Query: 265 taacaggagctctaacgcctatttcca 291 ||||||||| ||||||||||||||||| Sbjct: 145456 taacaggagttctaacgcctatttcca 145482
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 265 taacaggagctctaacgcctatttcca 291 ||||||||| ||||||||||||||||| Sbjct: 93917 taacaggagttctaacgcctatttcca 93891
>emb|AL732568.8| Mouse DNA sequence from clone RP23-469G19 on chromosome 4, complete sequence Length = 169474 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 13 aacaaaaagtaccataaaagcatgga 38 ||||||||||||| |||||||||||| Sbjct: 140385 aacaaaaagtaccctaaaagcatgga 140410
>gb|AC152953.1| Mus musculus 10 BAC RP23-403E19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 211343 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 actgaactactgaacttaggg 198 ||||||||||||||||||||| Sbjct: 54803 actgaactactgaacttaggg 54783
>gb|AC160017.2| Mus musculus BAC clone RP23-172C19 from chromosome 9, complete sequence Length = 189417 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 caaacagcactagcagcaac 149 |||||||||||||||||||| Sbjct: 77236 caaacagcactagcagcaac 77217
>emb|AL450398.9| Human DNA sequence from clone RP11-202P11 on chromosome 10 Contains the 3'end of a novel gene containing FLJ40604 and FLJ40930, complete sequence Length = 55063 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 tacctttttgtttaatgact 331 |||||||||||||||||||| Sbjct: 2088 tacctttttgtttaatgact 2107
>emb|AL031295.1|HS886K2 Human DNA sequence from clone RP5-886K2 on chromosome 1p35.1-36.12 Contains a neuronal thread protein (AD7C-NTP) pseudogene, the TCEB3 gene for transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A), two novel genes, a novel gene (HT014), the LYPLA2 gene for lysophospholipase II, the GALE gene for UDP-galactose-4-epimerase and the HMGCL gene for 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria), complete sequence Length = 124001 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ataataacagaagtttggga 74 |||||||||||||||||||| Sbjct: 29397 ataataacagaagtttggga 29378
>gb|AC068112.5| Homo sapiens chromosome 18, clone RP11-526H11, complete sequence Length = 165840 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 accaccctacctaccttgaa 241 |||||||||||||||||||| Sbjct: 113094 accaccctacctaccttgaa 113075
>gb|AC020908.7| Homo sapiens chromosome 19 clone CTD-2528A14, complete sequence Length = 174034 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 ttccaaacatgcagaacagttgag 113 |||||||||||||||| ||||||| Sbjct: 44313 ttccaaacatgcagaaaagttgag 44290
>gb|AF052857.1|AF052857 Dicentra eximia PISTILLATA homolog DePI-1 mRNA, partial cds Length = 894 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 tatttccatagaagttgcccttca 307 |||||||||||||| ||||||||| Sbjct: 318 tatttccatagaagatgcccttca 341
>emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chromosome X, complete sequence Length = 201642 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 caaacatgcagaacagttga 112 |||||||||||||||||||| Sbjct: 29543 caaacatgcagaacagttga 29524 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,899,936 Number of Sequences: 3902068 Number of extensions: 2899936 Number of successful extensions: 50521 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50458 Number of HSP's gapped (non-prelim): 63 length of query: 331 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 309 effective length of database: 17,147,199,772 effective search space: 5298484729548 effective search space used: 5298484729548 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)