Clone Name | rbastl12c12 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 210 bits (106), Expect = 7e-52 Identities = 128/135 (94%), Gaps = 4/135 (2%) Strand = Plus / Minus Query: 1 gggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagccagctgagct 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2887 gggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagccagctgagct 2828 Query: 61 gagcttccgcatgccgatcaaacccgtcgggcacgcaccc----ttattggcttaattat 116 |||||||||||||||||||| |||||||| |||||||||| |||||| ||||||||| Sbjct: 2827 gagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgccttaattat 2768 Query: 117 tcatgcaccggcaca 131 ||||||||||||||| Sbjct: 2767 tcatgcaccggcaca 2753
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 aaacaagggattttttctgca 26 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 gcaaaacaagggattttttct 23 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>emb|BX294441.9| Mouse DNA sequence from clone RP23-421H1 on chromosome 2, complete sequence Length = 96360 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 ttggcttaattattcatgcac 124 ||||||||||||||||||||| Sbjct: 14757 ttggcttaattattcatgcac 14737
>emb|AL590439.12| Human DNA sequence from clone RP11-394I23 on chromosome 10 Contains a novel gene (FLJ13397) (CARP) and a CpG island, complete sequence Length = 192044 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ttattggcttaattattcat 120 |||||||||||||||||||| Sbjct: 117208 ttattggcttaattattcat 117227
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 tattggcttaattattcatgcacc 125 ||||||||||||||||||| |||| Sbjct: 1061447 tattggcttaattattcatccacc 1061470
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 99 ccttattggcttaattattcatg 121 |||||||| |||||||||||||| Sbjct: 136193 ccttattgccttaattattcatg 136215 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 99 ccttattggcttaattattcatg 121 |||||||| |||||||||||||| Sbjct: 94214 ccttattgccttaattattcatg 94236
>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence Length = 187121 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 ccagctgagctgagcttcc 68 ||||||||||||||||||| Sbjct: 93147 ccagctgagctgagcttcc 93129
>gb|AC124774.4| Mus musculus BAC clone RP23-49E5 from 15, complete sequence Length = 227514 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 ccttattggcttaattatt 117 ||||||||||||||||||| Sbjct: 59428 ccttattggcttaattatt 59446
>emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chromosome 1 Contains the 3' end of a novel gene and apolipoprotein L 3 (APOL3) pseudogene, complete sequence Length = 172898 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 ttggcttaattattcatgc 122 ||||||||||||||||||| Sbjct: 131064 ttggcttaattattcatgc 131082
>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete sequence Length = 157981 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 gcaaaacaagggatttttt 21 ||||||||||||||||||| Sbjct: 129429 gcaaaacaagggatttttt 129411
>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence Length = 140774 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 gcaaaacaagggatttttt 21 ||||||||||||||||||| Sbjct: 89166 gcaaaacaagggatttttt 89184
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 99 ccttattggcttaattattcatg 121 |||||||| |||||||||||||| Sbjct: 21745017 ccttattgccttaattattcatg 21745039 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 99 ccttattggcttaattattcatg 121 |||||||| |||||||||||||| Sbjct: 21703038 ccttattgccttaattattcatg 21703060
>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence Length = 185162 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 agctgagctgagcttccgc 70 ||||||||||||||||||| Sbjct: 29471 agctgagctgagcttccgc 29453
>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence Length = 199128 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 agctgagctgagcttccgc 70 ||||||||||||||||||| Sbjct: 101444 agctgagctgagcttccgc 101426
>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete sequence Length = 227565 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 gcaaaacaagggatttttt 21 ||||||||||||||||||| Sbjct: 225395 gcaaaacaagggatttttt 225377 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 848,102 Number of Sequences: 3902068 Number of extensions: 848102 Number of successful extensions: 57494 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57430 Number of HSP's gapped (non-prelim): 63 length of query: 131 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 110 effective length of database: 17,151,101,840 effective search space: 1886621202400 effective search space used: 1886621202400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)