ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 210 7e-52
2emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.39
3emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.39
4emb|BX294441.9| Mouse DNA sequence from clone RP23-421H1 on chro... 42 0.39
5emb|AL590439.12| Human DNA sequence from clone RP11-394I23 on ch... 40 1.6
6gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 1.6
7gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 38 6.2
8gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosom... 38 6.2
9gb|AC124774.4| Mus musculus BAC clone RP23-49E5 from 15, complet... 38 6.2
10emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chro... 38 6.2
11emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in ... 38 6.2
12emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, ... 38 6.2
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
14gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, comp... 38 6.2
15gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, compl... 38 6.2
16emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 38 6.2

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  210 bits (106), Expect = 7e-52
 Identities = 128/135 (94%), Gaps = 4/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    gggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagccagctgagct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2887 gggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagccagctgagct 2828

                                                                        
Query: 61   gagcttccgcatgccgatcaaacccgtcgggcacgcaccc----ttattggcttaattat 116
            |||||||||||||||||||| |||||||| ||||||||||    |||||| |||||||||
Sbjct: 2827 gagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgccttaattat 2768

                           
Query: 117  tcatgcaccggcaca 131
            |||||||||||||||
Sbjct: 2767 tcatgcaccggcaca 2753



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     aaacaagggattttttctgca 26
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     gcaaaacaagggattttttct 23
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



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>emb|BX294441.9| Mouse DNA sequence from clone RP23-421H1 on chromosome 2, complete
             sequence
          Length = 96360

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   ttggcttaattattcatgcac 124
             |||||||||||||||||||||
Sbjct: 14757 ttggcttaattattcatgcac 14737



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>emb|AL590439.12| Human DNA sequence from clone RP11-394I23 on chromosome 10 Contains a
              novel gene (FLJ13397) (CARP) and a CpG island, complete
              sequence
          Length = 192044

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ttattggcttaattattcat 120
              ||||||||||||||||||||
Sbjct: 117208 ttattggcttaattattcat 117227



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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 102     tattggcttaattattcatgcacc 125
               ||||||||||||||||||| ||||
Sbjct: 1061447 tattggcttaattattcatccacc 1061470



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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 99     ccttattggcttaattattcatg 121
              |||||||| ||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 99    ccttattggcttaattattcatg 121
             |||||||| ||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236



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>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence
          Length = 187121

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    ccagctgagctgagcttcc 68
             |||||||||||||||||||
Sbjct: 93147 ccagctgagctgagcttcc 93129



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>gb|AC124774.4| Mus musculus BAC clone RP23-49E5 from 15, complete sequence
          Length = 227514

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 99    ccttattggcttaattatt 117
             |||||||||||||||||||
Sbjct: 59428 ccttattggcttaattatt 59446



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>emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chromosome 1 Contains the 3'
              end of a novel gene and apolipoprotein L 3 (APOL3)
              pseudogene, complete sequence
          Length = 172898

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 104    ttggcttaattattcatgc 122
              |||||||||||||||||||
Sbjct: 131064 ttggcttaattattcatgc 131082



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>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete
              sequence
          Length = 157981

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      gcaaaacaagggatttttt 21
              |||||||||||||||||||
Sbjct: 129429 gcaaaacaagggatttttt 129411



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>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence
          Length = 140774

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     gcaaaacaagggatttttt 21
             |||||||||||||||||||
Sbjct: 89166 gcaaaacaagggatttttt 89184



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 99       ccttattggcttaattattcatg 121
                |||||||| ||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 99       ccttattggcttaattattcatg 121
                |||||||| ||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060



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>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence
          Length = 185162

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 52    agctgagctgagcttccgc 70
             |||||||||||||||||||
Sbjct: 29471 agctgagctgagcttccgc 29453



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>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence
          Length = 199128

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     agctgagctgagcttccgc 70
              |||||||||||||||||||
Sbjct: 101444 agctgagctgagcttccgc 101426



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>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete
              sequence
          Length = 227565

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      gcaaaacaagggatttttt 21
              |||||||||||||||||||
Sbjct: 225395 gcaaaacaagggatttttt 225377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 848,102
Number of Sequences: 3902068
Number of extensions: 848102
Number of successful extensions: 57494
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57430
Number of HSP's gapped (non-prelim): 63
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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