>REP_LACHI (P35857) Protein rep (Replication protein)|
          Length = 314

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = +1

Query: 4   GRALSKLFQQSSTAQLDI*VTYNCPCYIRMTV*TTFQNIPRGTAHTHVRKTNREKPYTYG 183
           GRA+SKLFQ    A+       N   Y+R T  T  +N   GT H H+      KP  + 
Sbjct: 127 GRAISKLFQYKKPAK-------NLLGYVRSTEITINKN---GTYHQHMHVLLFVKPTYFK 176

Query: 184 QSQ---NKLEHTRTLQAAQHSTLSPCTN 258
            S    N+ E ++  Q A      P  N
Sbjct: 177 DSANYINQAEWSKLWQRAMKLDYQPIVN 204

>YCF2_ANTFO (Q859W7) Protein ycf2|
          Length = 2392

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 160  REKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTN 291
            REK  T+  S+N  E   + Q AQ+ T      ER+  +IR+ N
Sbjct: 2108 REKEQTFSVSENSREIFHSSQVAQYKTKEELPYERILSRIRRRN 2151

>CYB_PLAFA (Q02768) Cytochrome b|
          Length = 376

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 31/121 (25%)
 Frame = -3

Query: 397 MRSINHMCLFLPLS-------------S*LVGTIHCWSSLCEW-----------LPVAFG 290
           +R +N+  ++LPLS             +  VG +  W  +  W           +PVA  
Sbjct: 94  LRGLNYSYMYLPLSWISGLILFMIFIVTAFVGYVLPWGQMSYWGATVITNLLSSIPVAVI 153

Query: 289 WFCEFY-------RSFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLFYVHAYGQ 131
           W C  Y       + FF L+                      + +C+VF+ +F++H +G 
Sbjct: 154 WICGGYTVSDPTIKRFFVLHF-----------------ILPFIGLCIVFIHIFFLHLHGS 196

Query: 130 S 128
           +
Sbjct: 197 T 197

>IF2_PSYAR (Q4FVL5) Translation initiation factor IF-2|
          Length = 908

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 112 QNIPRGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTN 291
           + I RGT+ T  R   R K     + +N+    R+ Q+AQH    P   E++ Y +  + 
Sbjct: 276 REIKRGTSSTTARGRGRRKNQDEREIKNRKNGLRSSQSAQHKFEKPV--EKIVYDVEISE 333

Query: 292 Q 294
           Q
Sbjct: 334 Q 334

>ADRB1_PIG (Q28998) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 468

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = -3

Query: 349 LVGTIHCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALACFVI---VH 179
           LV T+   S+L  +LP+   W+ +      R Y D  CC  +  R+ YA+A  V+   V 
Sbjct: 177 LVCTVWAISALVSFLPILMHWWRDKGAEARRCYNDPKCCDFVTNRA-YAIASSVVSFYVP 235

Query: 178 MCM---VFLGLF 152
           +C+   V+L +F
Sbjct: 236 LCIMAFVYLRVF 247

>ADRB1_MELGA (P07700) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor) (Beta-T)
          Length = 483

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -3

Query: 349 LVGTIHCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALACFVIVHMCM 170
           ++ T+   S+L  +LP+   W+ +      + Y D  CC  +  R+ YA+A  +I     
Sbjct: 161 IICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRA-YAIASSIISFYIP 219

Query: 169 VFLGLF-YVHAYGQS 128
           + + +F Y+  Y ++
Sbjct: 220 LLIMIFVYLRVYREA 234

>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1|
          Length = 396

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 124 RGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTNQK 297
           R   H+H R+T+ E+P + GQ Q +   T+ LQA +         ER  Y  R+   +
Sbjct: 142 RHRGHSHQRRTSNERPGS-GQGQGRDRDTQNLQAQE--------EEREFYNARRREHR 190

>AROK_CORGL (Q9X5D1) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 169

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 145 VRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTNQKPQVAI 312
           +R+T  E+     Q+ +  EH R L   +    +P   E  TY++R  N+ PQ  +
Sbjct: 108 IRRTANERSRPVLQAADPAEHYRNLVKVR----TPLYEEVATYRLRTNNRSPQQVV 159

>CYB_PLAVS (O63696) Cytochrome b|
          Length = 382

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 31/121 (25%)
 Frame = -3

Query: 397 MRSINHMCLFLPLS-------------S*LVGTIHCWSSLCEW-----------LPVAFG 290
           +R +N+  L+LPLS             +  +G +  W  +  W           +PV   
Sbjct: 94  LRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPVLVI 153

Query: 289 WFCEFY-------RSFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLFYVHAYGQ 131
           W C  Y       + FF L+                      V +C+VF+ +F++H +G 
Sbjct: 154 WLCGGYTVSDPTIKRFFVLHF-----------------ILPFVALCIVFIHIFFLHLHGS 196

Query: 130 S 128
           +
Sbjct: 197 T 197

>Y663_GLOVI (Q7NMV2) UPF0078 membrane protein gll0663|
          Length = 205

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 348 WLARSIAGHLCANGYLWLLVGFANFIGHSF 259
           WLAR++AG   A  ++ L  G A  +GHS+
Sbjct: 72  WLARTLAGGEDAGAWIVLGAGLAAIVGHSW 101

>ZN75A_HUMAN (Q96N20) Zinc finger protein 75A|
          Length = 296

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = +1

Query: 136 HTHVRKTNREKPYT-------YGQSQNKLEHTRTLQAAQHSTLSPC 252
           HTH R    EKP+T       + Q+ + ++H RT    Q  T S C
Sbjct: 233 HTHQRTHTGEKPFTCHECGKKFSQNSHLIKHRRTHTGEQPYTCSIC 278

>SPIKE_BSCR3 (Q3I5J5) Spike glycoprotein precursor (Peplomer protein) (E2)|
           [Contains: Spike protein S1; Spike protein S2]
          Length = 1241

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +2

Query: 5   GGLFPSCFSNLQQ-----HN*TYR*HIIVRVTSE*QCKQPSKTYPGGLPIRMYVKQTEKN 169
           G +F S F N  Q     +N T   HII+RV +   CK+P  T   G     +V Q+  N
Sbjct: 106 GWIFGSTFDNTTQSAVIVNNST---HIIIRVCNFNLCKEPMYTVSRGAQQSSWVYQSAFN 162

Query: 170 HTH 178
            T+
Sbjct: 163 CTY 165

>ATP6_TRYBB (P24499) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 229

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
 Frame = -3

Query: 337 IHCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALAC-FVIVHMCMVFL 161
           + C+S LC  L      FC    S F L M       +     Y + C F++      F 
Sbjct: 130 LECFSLLCRCLSTFLRLFCNLLSSHFLLLMFFDFFYFIFVFFFYGVFCYFILFIFVFCFC 189

Query: 160 GLFYVHAY 137
            LFYV  Y
Sbjct: 190 LLFYVFLY 197

>NUP59_YEAST (Q05166) Nucleoporin ASM4 (Nuclear pore protein NUP59)|
          Length = 528

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 26/111 (23%), Positives = 48/111 (43%)
 Frame = +3

Query: 39  NSTTRHIGNI*LSVLHQNDSVNNLPKHTQGDCPYACT*NKPRKTIHIWTITKQARAY*DL 218
           N+ + +IGN  ++  +  +  NN+ +H QG+ P     N P+K     T+ ++       
Sbjct: 72  NNYSSNIGNNSINNNNIKNGTNNISQHGQGNNPSWV--NNPKKRFTPHTVIRR------- 122

Query: 219 ASSTAQHTQSMYKRKNDL*NSQNQPKATGSHSHKDDQQWIVPTNHDERGKN 371
              T +   S    +ND  +S N      S  ++D       + H+ER K+
Sbjct: 123 --KTTKQNSSSDINQNDDSSSMNATMRNFSKQNQD-------SKHNERNKS 164

>ILVD_RALSO (Q8XWR1) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 557

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
 Frame = +1

Query: 112 QNIPRGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTN------ERMTY 273
           Q+I +G A    R  NR   Y  G  +    +     A  HST++PC +      +    
Sbjct: 8   QHITQGVA----RSPNRSMYYALGYKKEDFSNPMIGVANGHSTITPCNSGLQKLADAAVA 63

Query: 274 KIRKTNQKPQV 306
            ++ +N  PQ+
Sbjct: 64  AVKASNANPQI 74

>SYGB_HELPY (P56454) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)|
           (Glycine--tRNA ligase beta chain) (GlyRS)
          Length = 701

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 140 RMYVKQTEKNHTHMDNHKTS*SILGPCKQHSTAHSVHVQT 259
           + Y +  EKNH  +D  K    IL   K+  T H + V+T
Sbjct: 210 KAYFEVLEKNHVILDPKKREAKILQEIKELETKHHIIVET 249

>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)|
          Length = 3866

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
 Frame = +1

Query: 115  NIPRGTAHTHVRKTNREKPY-----------TYGQSQNKLEHTRTL-------QAAQHST 240
            N+P   A+T V  T R  P            +  Q    L ++RT        QAA+   
Sbjct: 1514 NLPESVAYTCVNCTERHPPEWRLALEKELQASLKQVLTALLNSRTTSHLLRYRQAAKPPD 1573

Query: 241  LSPCTNERMTYKIRKTNQKPQVAIRTKMTSNGSCQPIMMRGVK 369
            L+P T E +    R + + P   + T+++     QP+ + GVK
Sbjct: 1574 LNPETEESIPS--RSSPEGPDPPVLTEVSKQDEQQPLDLEGVK 1614

>CSTA_ECOLI (P15078) Carbon starvation protein A|
          Length = 701

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 202 LACFVIVHMCMVFLGLFYVHAYGQSPWVCFGRLFTL 95
           +ACF+I+ + +  L +  V A   SPW  +   FT+
Sbjct: 165 VACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTI 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,805,735
Number of Sequences: 219361
Number of extensions: 1352581
Number of successful extensions: 3267
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3266
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)