ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC126783.33| Medicago truncatula clone mth2-15k17, complete s... 44 0.36
2gb|AC151368.3| Aotus nancymaae clone CH258-251O19, complete sequ... 42 1.4
3gb|AC162523.9| Mus musculus chromosome 8, clone RP23-370L21, com... 42 1.4
4gb|AC167707.2| Reniera sp. JGI-2005 clone JGIBAYC-9L12, complete... 42 1.4
5gb|AC123616.11| Mus musculus chromosome 8, clone RP23-4F1, compl... 42 1.4
6gb|AC127551.7| Mus musculus BAC clone RP24-547H23 from chromosom... 42 1.4
7emb|AL157882.5| Human DNA sequence from clone RP11-202I11 on chr... 42 1.4
8gb|AC007782.20| Homo sapiens 12 BAC RP11-515B12 (Roswell Park Ca... 42 1.4
9gb|AC148057.3| Callicebus moloch clone LB5-121J11, complete sequ... 42 1.4
10gb|AC147845.3| Saimiri boliviensis boliviensis clone CH254-335K1... 42 1.4
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
13gb|AC107079.6| Homo sapiens BAC clone RP11-585E12 from 2, comple... 42 1.4
14dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
15emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chr... 42 1.4
16dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17gb|DP000019.1| Callicebus moloch target 1 genomic scaffold 42 1.4
18gb|AC166746.7| Mus musculus chromosome 19, clone RP24-248H10, co... 40 5.7
19gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 40 5.7
20ref|XM_592663.2| PREDICTED: Bos taurus similar to transmembrane ... 40 5.7
21gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome... 40 5.7
22gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, com... 40 5.7
23gb|AC087801.69| Mus musculus strain C57BL/6J clone rp23-396i23 m... 40 5.7
24gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosom... 40 5.7
25gb|AC122248.5| Mus musculus BAC clone RP23-156N18 from 7, comple... 40 5.7
26gb|AC091708.2| Gallus gallus clone XXbac-68C5, complete sequence 40 5.7
27emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in ... 40 5.7
28gb|AC163701.4| Gallus gallus BAC clone CH261-117C7 from chromoso... 40 5.7
29gb|AC146883.3| Callithrix jacchus clone CH259-225J7, complete se... 40 5.7
30dbj|AK030732.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 40 5.7
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
32dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
33dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
34dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
35dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
36dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
37gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, co... 40 5.7
38emb|CR974440.6| Zebrafish DNA sequence from clone CH73-78M16 in ... 40 5.7
39gb|AC151001.2| Mus musculus BAC clone RP23-45M16 from 7, complet... 40 5.7
40dbj|AP006391.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 5.7
41dbj|AB066524.1| Macaca fascicularis brain cDNA clone:QmoA-11085,... 40 5.7 
>gb|AC126783.33| Medicago truncatula clone mth2-15k17, complete sequence
          Length = 117437

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 219   gcaagcagcacagcacagcaca 240
             ||||||||||||||||||||||
Sbjct: 27034 gcaagcagcacagcacagcaca 27055
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>gb|AC151368.3| Aotus nancymaae clone CH258-251O19, complete sequence
          Length = 189563

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     ggagggagggctctttccaag 21
             |||||||||||||||||||||
Sbjct: 64293 ggagggagggctctttccaag 64273
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>gb|AC162523.9| Mus musculus chromosome 8, clone RP23-370L21, complete sequence
          Length = 193777

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    aggaccttgcaagcagcacag 231
              |||||||||||||||||||||
Sbjct: 184822 aggaccttgcaagcagcacag 184802
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>gb|AC167707.2| Reniera sp. JGI-2005 clone JGIBAYC-9L12, complete sequence
          Length = 40570

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 282   caaaaccaaccaaaagccaca 302
             |||||||||||||||||||||
Sbjct: 12679 caaaaccaaccaaaagccaca 12659
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>gb|AC123616.11| Mus musculus chromosome 8, clone RP23-4F1, complete sequence
          Length = 228851

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    aggaccttgcaagcagcacag 231
              |||||||||||||||||||||
Sbjct: 108739 aggaccttgcaagcagcacag 108759
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>gb|AC127551.7| Mus musculus BAC clone RP24-547H23 from chromosome 8, complete sequence
          Length = 204342

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    aggaccttgcaagcagcacag 231
              |||||||||||||||||||||
Sbjct: 202779 aggaccttgcaagcagcacag 202799
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>emb|AL157882.5| Human DNA sequence from clone RP11-202I11 on chromosome 9q21.32-22.2
             Contains the 5' end of the AGTPBP1 gene for  ATP/GTP
             binding protein 1 (NNA1, KIAA1035), a novel gene, the 5'
             end of a pseudogene similar to part of a novel protein
             (DKFZp434D0917) and a CpG island, complete sequence
          Length = 172903

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 364   gtaaaaacaagcacatatgattgat 388
             ||||||||||| |||||||||||||
Sbjct: 63249 gtaaaaacaagtacatatgattgat 63273
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>gb|AC007782.20| Homo sapiens 12 BAC RP11-515B12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166083

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 368    aaacaagcacatatgattgat 388
              |||||||||||||||||||||
Sbjct: 146682 aaacaagcacatatgattgat 146662
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>gb|AC148057.3| Callicebus moloch clone LB5-121J11, complete sequence
          Length = 152135

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     ggagggagggctctttccaag 21
             |||||||||||||||||||||
Sbjct: 34618 ggagggagggctctttccaag 34598
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>gb|AC147845.3| Saimiri boliviensis boliviensis clone CH254-335K11, complete sequence
          Length = 222317

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     ggagggagggctctttccaag 21
             |||||||||||||||||||||
Sbjct: 22262 ggagggagggctctttccaag 22242
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 221      aagcagcacagcacagcacac 241
                |||||||||||||||||||||
Sbjct: 20452453 aagcagcacagcacagcacac 20452473



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 221      aagcagcacagcacagcaca 240
                ||||||||||||||||||||
Sbjct: 21854019 aagcagcacagcacagcaca 21854038
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 378      atatgattgattgatctcattctgc 402
                ||||||||||||||||| |||||||
Sbjct: 28255741 atatgattgattgatctgattctgc 28255717
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>gb|AC107079.6| Homo sapiens BAC clone RP11-585E12 from 2, complete sequence
          Length = 133304

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     agggagggctctttccaagtt 23
             |||||||||||||||||||||
Sbjct: 96792 agggagggctctttccaagtt 96772
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0623A10
          Length = 156517

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 378   atatgattgattgatctcattctgc 402
             ||||||||||||||||| |||||||
Sbjct: 53770 atatgattgattgatctgattctgc 53746
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>emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chromosome X, complete
              sequence
          Length = 189900

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     tccaagttgtttcagcaatct 36
              |||||||||||||||||||||
Sbjct: 105790 tccaagttgtttcagcaatct 105770
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>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0456B03
          Length = 152973

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 221   aagcagcacagcacagcacac 241
             |||||||||||||||||||||
Sbjct: 83083 aagcagcacagcacagcacac 83103
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>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 1       ggagggagggctctttccaag 21
               |||||||||||||||||||||
Sbjct: 1532344 ggagggagggctctttccaag 1532324
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>gb|AC166746.7| Mus musculus chromosome 19, clone RP24-248H10, complete sequence
          Length = 156084

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   agcagcacagcacagcacac 241
             ||||||||||||||||||||
Sbjct: 32602 agcagcacagcacagcacac 32583
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>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 2       gagggagggctctttccaag 21
               ||||||||||||||||||||
Sbjct: 1553536 gagggagggctctttccaag 1553517
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>ref|XM_592663.2| PREDICTED: Bos taurus similar to transmembrane protein 17
           (LOC514758), mRNA
          Length = 1849

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 13  ctttccaagttgtttcagca 32
           ||||||||||||||||||||
Sbjct: 611 ctttccaagttgtttcagca 630
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>gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome 7, complete sequence
          Length = 230675

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    aagcagcacagcacagcaca 240
              ||||||||||||||||||||
Sbjct: 185816 aagcagcacagcacagcaca 185835
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>gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, complete sequence
          Length = 213163

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    gagaaaaaccatacacatat 180
              ||||||||||||||||||||
Sbjct: 195026 gagaaaaaccatacacatat 195045
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>gb|AC087801.69| Mus musculus strain C57BL/6J clone rp23-396i23 map 1, complete sequence
          Length = 197679

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    ccttccaaaacatacccagg 126
              ||||||||||||||||||||
Sbjct: 172430 ccttccaaaacatacccagg 172411
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>gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosome 7, complete sequence
          Length = 139125

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   aagcagcacagcacagcaca 240
             ||||||||||||||||||||
Sbjct: 91892 aagcagcacagcacagcaca 91873
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>gb|AC122248.5| Mus musculus BAC clone RP23-156N18 from 7, complete sequence
          Length = 198901

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     ctctttccaagttgtttcag 30
              ||||||||||||||||||||
Sbjct: 122637 ctctttccaagttgtttcag 122618
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>gb|AC091708.2| Gallus gallus clone XXbac-68C5, complete sequence
          Length = 124309

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 49   ctagacatataggtaacatataat 72
            ||||||||||||| ||||||||||
Sbjct: 5808 ctagacatataggaaacatataat 5831
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>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17,
              complete sequence
          Length = 185139

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 353    tgatgagaggggtaaaaaca 372
              ||||||||||||||||||||
Sbjct: 117439 tgatgagaggggtaaaaaca 117420
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>gb|AC163701.4| Gallus gallus BAC clone CH261-117C7 from chromosome unknown, complete
              sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 49     ctagacatataggtaacatataat 72
              ||||||||||||| ||||||||||
Sbjct: 214468 ctagacatataggaaacatataat 214445
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>gb|AC146883.3| Callithrix jacchus clone CH259-225J7, complete sequence
          Length = 216802

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     gagggagggctctttccaag 21
             ||||||||||||||||||||
Sbjct: 25145 gagggagggctctttccaag 25126
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>dbj|AK030732.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730424L04 product:hypothetical
           Ubiquitin carboxyl-terminal hydrolase family 2
           containing protein, full insert sequence
          Length = 2337

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 107 ccttccaaaacatacccagg 126
           ||||||||||||||||||||
Sbjct: 213 ccttccaaaacatacccagg 194
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 224      cagcacagcacagcacactc 243
                ||||||||||||||||||||
Sbjct: 29562271 cagcacagcacagcacactc 29562252
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 222     agcagcacagcacagcacac 241
               ||||||||||||||||||||
Sbjct: 5079827 agcagcacagcacagcacac 5079808
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>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0453H10
          Length = 133464

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   agcagcacagcacagcacac 241
             ||||||||||||||||||||
Sbjct: 40325 agcagcacagcacagcacac 40306
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>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0627E10
          Length = 163388

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   cagcacagcacagcacactc 243
             ||||||||||||||||||||
Sbjct: 88943 cagcacagcacagcacactc 88924
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>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0429B05
          Length = 155024

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    aagcagcacagcacagcaca 240
              ||||||||||||||||||||
Sbjct: 133602 aagcagcacagcacagcaca 133621
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>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0409A07
          Length = 146663

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   aagcagcacagcacagcaca 240
             ||||||||||||||||||||
Sbjct: 54688 aagcagcacagcacagcaca 54707
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>gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, complete sequence
          Length = 224141

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    acaaacgaaagaatgaccta 272
              ||||||||||||||||||||
Sbjct: 113991 acaaacgaaagaatgaccta 113972
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>emb|CR974440.6| Zebrafish DNA sequence from clone CH73-78M16 in linkage group 22,
             complete sequence
          Length = 123466

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   agcagcacagcacagcacac 241
             ||||||||||||||||||||
Sbjct: 90010 agcagcacagcacagcacac 90029
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>gb|AC151001.2| Mus musculus BAC clone RP23-45M16 from 7, complete sequence
          Length = 176698

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   aagcagcacagcacagcaca 240
             ||||||||||||||||||||
Sbjct: 51600 aagcagcacagcacagcaca 51581
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>dbj|AP006391.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09E08, TM0265,
             complete sequence
          Length = 100864

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    gttgtttcagcaatcttcaa 40
             ||||||||||||||||||||
Sbjct: 88351 gttgtttcagcaatcttcaa 88370
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>dbj|AB066524.1| Macaca fascicularis brain cDNA clone:QmoA-11085, full insert
           sequence
          Length = 1776

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 157 aaccgagaaaaaccatacac 176
           ||||||||||||||||||||
Sbjct: 129 aaccgagaaaaaccatacac 110


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,805,245
Number of Sequences: 3902068
Number of extensions: 3805245
Number of successful extensions: 82102
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81915
Number of HSP's gapped (non-prelim): 187
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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