ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT2_CANGA (P15114) Metallothionein-2 (MT-2) (Metallothionein-II)... 30 2.3
2Y1037_TREPA (O84000) Hypothetical UPF0073 protein TP1037 28 5.2
3ABCA4_MOUSE (O35600) Retinal-specific ATP-binding cassette trans... 28 5.2

>MT2_CANGA (P15114) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)|
           [Contains: Metallothionein-2' (MT-2')
           (Metallothionein-II') (MT-II')]
          Length = 51

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 93  SCCGGPLYICCNSITEWCCTKAVRCLTC 10
           +CC  P   C NS +  C  +  +C TC
Sbjct: 22  NCCAKPACACTNSASNECSCQTCKCQTC 49



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>Y1037_TREPA (O84000) Hypothetical UPF0073 protein TP1037|
          Length = 238

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -1

Query: 159 IGFSIFGVALELMKFCT*ILFYSCCGGPLYICCNSITEWCC-------TKAVRCLTCFY 4
           +GFS+FG +L ++  C+  L+++   G  Y+    + + CC       T    CLT  Y
Sbjct: 75  VGFSVFGSSLIVLYLCS-TLYHALPRGAKYVF--GVIDHCCIYVLIAGTYTASCLTTLY 130



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>ABCA4_MOUSE (O35600) Retinal-specific ATP-binding cassette transporter|
            (ATP-binding cassette sub-family A member 4) (RIM ABC
            transporter) (RIM protein) (RmP)
          Length = 2310

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 172  CSCQNRLFYFRCCTRVDEI 116
            CSC ++ F  RC TRVDEI
Sbjct: 1177 CSCTSKGFSTRCPTRVDEI 1195


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,825,385
Number of Sequences: 219361
Number of extensions: 323397
Number of successful extensions: 906
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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