Clone Name | rbastl12c10 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | MT2_CANGA (P15114) Metallothionein-2 (MT-2) (Metallothionein-II)... | 30 | 2.3 | 2 | Y1037_TREPA (O84000) Hypothetical UPF0073 protein TP1037 | 28 | 5.2 | 3 | ABCA4_MOUSE (O35600) Retinal-specific ATP-binding cassette trans... | 28 | 5.2 |
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>MT2_CANGA (P15114) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| [Contains: Metallothionein-2' (MT-2') (Metallothionein-II') (MT-II')] Length = 51 Score = 29.6 bits (65), Expect = 2.3 Identities = 10/28 (35%), Positives = 14/28 (50%) Frame = -1 Query: 93 SCCGGPLYICCNSITEWCCTKAVRCLTC 10 +CC P C NS + C + +C TC Sbjct: 22 NCCAKPACACTNSASNECSCQTCKCQTC 49
>Y1037_TREPA (O84000) Hypothetical UPF0073 protein TP1037| Length = 238 Score = 28.5 bits (62), Expect = 5.2 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%) Frame = -1 Query: 159 IGFSIFGVALELMKFCT*ILFYSCCGGPLYICCNSITEWCC-------TKAVRCLTCFY 4 +GFS+FG +L ++ C+ L+++ G Y+ + + CC T CLT Y Sbjct: 75 VGFSVFGSSLIVLYLCS-TLYHALPRGAKYVF--GVIDHCCIYVLIAGTYTASCLTTLY 130
>ABCA4_MOUSE (O35600) Retinal-specific ATP-binding cassette transporter| (ATP-binding cassette sub-family A member 4) (RIM ABC transporter) (RIM protein) (RmP) Length = 2310 Score = 28.5 bits (62), Expect = 5.2 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -3 Query: 172 CSCQNRLFYFRCCTRVDEI 116 CSC ++ F RC TRVDEI Sbjct: 1177 CSCTSKGFSTRCPTRVDEI 1195 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,825,385 Number of Sequences: 219361 Number of extensions: 323397 Number of successful extensions: 906 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 864 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 906 length of database: 80,573,946 effective HSP length: 34 effective length of database: 73,115,672 effective search space used: 1754776128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)