Clone Name | rbastl12c10 |
---|---|
Clone Library Name | barley_pub |
>emb|AL118502.38|HSA371L19 Human DNA sequence from clone RP11-371L19 on chromosome 20 Contains the C20orf54 gene, the C20orf55 gene, the RPS10L gene for ribosomal protein S10-like and five CpG islands, complete sequence Length = 126259 Score = 42.1 bits (21), Expect = 0.56 Identities = 24/25 (96%) Strand = Plus / Minus Query: 94 atagaacaaaattcatgtgcaaaat 118 |||||||||||||||| |||||||| Sbjct: 78677 atagaacaaaattcatttgcaaaat 78653
>gb|AF092920.1| Hydra viridis head-activator binding protein precursor (HAB) mRNA, complete cds Length = 5359 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gaacaaaattcatgtgcaaa 116 |||||||||||||||||||| Sbjct: 5040 gaacaaaattcatgtgcaaa 5021
>emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chromosome 10 Contains part of the UPF2 gene for UPF2 regulator of nonsense transcripts homolog (yeast) (FLJ38872), complete sequence Length = 76287 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 caacaccgaaaatagaaaag 154 |||||||||||||||||||| Sbjct: 23118 caacaccgaaaatagaaaag 23137
>gb|AC013463.7| Homo sapiens BAC clone RP11-303H9 from 2, complete sequence Length = 168493 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 aatagaacaaaattcatgtg 112 |||||||||||||||||||| Sbjct: 148162 aatagaacaaaattcatgtg 148143
>gb|AC157927.5| Mus musculus chromosome 3, clone RP24-85O24, complete sequence Length = 195262 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 caaataaaagcaagtcaaa 19 ||||||||||||||||||| Sbjct: 36485 caaataaaagcaagtcaaa 36503
>gb|AC150657.1| Pan troglodytes chromosome 8 clone PTB-123K23 map human ortholog p23.1, complete sequence Length = 173624 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 57928 caccacaacaagaatagaa 57910
>gb|AC150656.1| Pan troglodytes chromosome 8 clone PTB-026H08 map human ortholog p23.1, complete sequence Length = 155351 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 43095 caccacaacaagaatagaa 43077
>gb|AF285443.4| Homo sapiens chromosome 8 clone SCb-449o20 map p23.1, complete sequence Length = 147536 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 44142 caccacaacaagaatagaa 44124
>gb|AF252830.5| Homo sapiens chromosome 8 clone SCb-295j18 map p23.1, complete sequence Length = 172560 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 36576 caccacaacaagaatagaa 36558
>gb|AF202031.5| Homo sapiens chromosome 8 clone SCb-497j4 map p23.1, complete sequence Length = 144793 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 94104 caccacaacaagaatagaa 94086
>gb|AF189745.6| Homo sapiens chromosome 8 clone SCb-324n11 map p23.1, complete sequence Length = 145275 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 91009 caccacaacaagaatagaa 90991
>gb|AC102902.6| Mus musculus chromosome 16, clone RP24-313G10, complete sequence Length = 122431 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 aatagaacaaaattcatgt 111 ||||||||||||||||||| Sbjct: 6103 aatagaacaaaattcatgt 6085
>gb|AC130360.4| Homo sapiens chromosome 8, clone RP11-287P18, complete sequence Length = 171474 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 140989 caccacaacaagaatagaa 141007
>gb|AC117230.3| Mus musculus BAC clone RP23-385F15 from 16, complete sequence Length = 184556 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 aatagaacaaaattcatgt 111 ||||||||||||||||||| Sbjct: 175258 aatagaacaaaattcatgt 175240
>ref|XM_647884.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (98.t00015) partial mRNA Length = 2544 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 aatagaacaaaattcatgt 111 ||||||||||||||||||| Sbjct: 2365 aatagaacaaaattcatgt 2383
>emb|Z80232.1|HS463A9 Human DNA sequence from clone RP3-463A9 on chromosome X Contains part of the COVA1 gene for cytosolic ovarian carcinoma antigen 1, complete sequence Length = 101196 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 158 attctgacatgagcagctt 176 ||||||||||||||||||| Sbjct: 89629 attctgacatgagcagctt 89611
>emb|AL627443.6| Human DNA sequence from clone RP11-459F1 on chromosome 6 Contains a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene, a novel gene, the T gene for T, brachyury homolog (mouse) and a CpG island, complete sequence Length = 164820 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 acaaaattcatgtgcaaaa 117 ||||||||||||||||||| Sbjct: 37968 acaaaattcatgtgcaaaa 37950
>emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chromosome Xq23-24, complete sequence Length = 105329 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 ttacaacatatgtataagg 77 ||||||||||||||||||| Sbjct: 56745 ttacaacatatgtataagg 56763
>emb|AL392084.6| Human DNA sequence from clone RP11-576E23 on chromosome 9 Contains a solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 (SLC25A6) pseudogene, complete sequence Length = 173942 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 acaaaattcatgtgcaaaa 117 ||||||||||||||||||| Sbjct: 13134 acaaaattcatgtgcaaaa 13152
>emb|AL117332.16|HSJ198K11 Human DNA sequence from clone RP1-198K11 on chromosome 20 Contains the 3' end of the C20orf19 gene for hypothalamus protein HT013, the 5' end of the XRN2 gene for 5'-3' exoribonuclease 2, a novel zinc finger pseudogene and a CpG island, complete sequence Length = 134132 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 95 tagaacaaaattcatgtgcaaaa 117 ||||||||||||||| ||||||| Sbjct: 102321 tagaacaaaattcatttgcaaaa 102299
>emb|BX572092.1| Prochlorococcus marinus MED4 complete genome; segment 3/5 Length = 348178 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 88 acaagaatagaacaaaatt 106 ||||||||||||||||||| Sbjct: 68468 acaagaatagaacaaaatt 68450
>gb|AC144950.1| Homo sapiens chromosome 8 clone RP11-191L23 map p22-p21, complete sequence Length = 147008 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 10977 caccacaacaagaatagaa 10995
>emb|CR457447.5| Zebrafish DNA sequence from clone CH211-108P6 in linkage group 15, complete sequence Length = 122848 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 33 tagtgcaacaccattctgttata 55 ||||||||| ||||||||||||| Sbjct: 108679 tagtgcaactccattctgttata 108657
>emb|BX324166.8| Zebrafish DNA sequence from clone DKEY-66A8 in linkage group 6, complete sequence Length = 215450 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 33 tagtgcaacaccattctgttata 55 ||||| ||||||||||||||||| Sbjct: 211293 tagtgtaacaccattctgttata 211315
>emb|BX469905.5| Zebrafish DNA sequence from clone CH211-160B7 in linkage group 9, complete sequence Length = 113585 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 1 caaataaaagcaagtcaaacaac 23 ||||||||||||||| ||||||| Sbjct: 13058 caaataaaagcaagtaaaacaac 13080
>gb|AC171265.5| Medicago truncatula clone mth2-2j17, complete sequence Length = 117361 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 caaataaaagcaagtcaaa 19 ||||||||||||||||||| Sbjct: 14109 caaataaaagcaagtcaaa 14127
>gb|AY005129.1| Homo sapiens EP2 gene, complete sequence, alternatively spliced Length = 19426 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 13891 caccacaacaagaatagaa 13873
>ref|XM_625401.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_320), partial mRNA Length = 405 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 acaagaatagaacaaaatt 106 ||||||||||||||||||| Sbjct: 163 acaagaatagaacaaaatt 181
>gb|AC134684.5| Homo sapiens chromosome 8, clone RP11-1118M6, complete sequence Length = 175202 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 10971 caccacaacaagaatagaa 10989
>gb|DQ295237.1| Uncultured marine bacterium Ant4D3, partial genomic sequence Length = 43920 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 117 atttcatcaactctagtgc 135 ||||||||||||||||||| Sbjct: 33602 atttcatcaactctagtgc 33584
>gb|AC010900.12| Homo sapiens BAC clone RP11-544H14 from 2, complete sequence Length = 208024 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 acaaaattcatgtgcaaaa 117 ||||||||||||||||||| Sbjct: 49407 acaaaattcatgtgcaaaa 49425
>gb|AC112510.9| Homo sapiens 3 BAC RP11-432A8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192749 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 39826 caccacaacaagaatagaa 39808
>gb|AC130339.12| Homo sapiens chromosome 8, clone RP13-941O14, complete sequence Length = 173255 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 164123 caccacaacaagaatagaa 164141
>gb|AC130367.12| Homo sapiens chromosome 8, clone RP11-1322A13, complete sequence Length = 188884 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 65126 caccacaacaagaatagaa 65108
>gb|AC134683.9| Homo sapiens chromosome 8, clone RP11-1175L4, complete sequence Length = 172084 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 45011 caccacaacaagaatagaa 44993
>gb|AC134395.7| Homo sapiens chromosome 8, clone RP11-739E3, complete sequence Length = 178401 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 41851 caccacaacaagaatagaa 41833
>emb|BX000431.10| Zebrafish DNA sequence from clone DKEY-14B11 in linkage group 15, complete sequence Length = 200161 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 33 tagtgcaacaccattctgttata 55 ||||||||| ||||||||||||| Sbjct: 133474 tagtgcaactccattctgttata 133496
>emb|BX548024.4| Zebrafish DNA sequence from clone DKEY-218H11 in linkage group 2, complete sequence Length = 218565 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 95 tagaacaaaattcatgtgcaaaa 117 |||||||| |||||||||||||| Sbjct: 168363 tagaacaacattcatgtgcaaaa 168385
>gb|AC102370.13| Mus musculus chromosome 3, clone RP23-256D7, complete sequence Length = 191171 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 caaataaaagcaagtcaaa 19 ||||||||||||||||||| Sbjct: 94360 caaataaaagcaagtcaaa 94342
>emb|AL662932.10| Mouse DNA sequence from clone RP23-15B7 on chromosome X, complete sequence Length = 218740 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 aacaagaatagaacaaaat 105 ||||||||||||||||||| Sbjct: 14947 aacaagaatagaacaaaat 14965
>gb|AC130365.5| Homo sapiens chromosome 8, clone RP11-1195F20, complete sequence Length = 171639 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 caccacaacaagaatagaa 99 ||||||||||||||||||| Sbjct: 145423 caccacaacaagaatagaa 145441
>emb|CR396594.10| Zebrafish DNA sequence from clone CH211-158B12 in linkage group 3, complete sequence Length = 48245 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 ttacaacatatgtataagg 77 ||||||||||||||||||| Sbjct: 24987 ttacaacatatgtataagg 24969 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,020,605 Number of Sequences: 3902068 Number of extensions: 2020605 Number of successful extensions: 141402 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141293 Number of HSP's gapped (non-prelim): 109 length of query: 177 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 155 effective length of database: 17,147,199,772 effective search space: 2657815964660 effective search space used: 2657815964660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)