ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1REG3B_MOUSE (P35230) Regenerating islet-derived protein 3 beta p... 30 1.8
2GGABP_RAT (Q6AY97) GGA-binding partner 29 2.3
3GGABP_MOUSE (Q9D8L5) GGA-binding partner 29 2.3
4REG3G_RAT (P42854) Regenerating islet-derived protein 3 gamma pr... 28 5.2
5LITH_PIG (Q29191) Lithostathine precursor [Contains: Lithostathi... 27 8.9

>REG3B_MOUSE (P35230) Regenerating islet-derived protein 3 beta precursor (Reg|
           III-beta) (Pancreatitis-associated protein 1)
          Length = 175

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 285 LLLHEGQGHRRLTDVPSLFIQC*RGAKLFFSYLVLIFR 172
           +LL + QG   L ++PS  I C +G++ + SY   +F+
Sbjct: 19  MLLSQVQGEDSLKNIPSARISCPKGSQAYGSYCYALFQ 56



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>GGABP_RAT (Q6AY97) GGA-binding partner|
          Length = 442

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 407 EERASRRAAKTVQRRSRVQLVEYLYGKRRGDSGSRR 300
           E+R S +A +   +R+R +LVEY+  +RR D  +R+
Sbjct: 378 EQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQ 413



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>GGABP_MOUSE (Q9D8L5) GGA-binding partner|
          Length = 442

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 407 EERASRRAAKTVQRRSRVQLVEYLYGKRRGDSGSRR 300
           E+R S +A +   +R+R +LVEY+  +RR D  +R+
Sbjct: 378 EQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQ 413



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>REG3G_RAT (P42854) Regenerating islet-derived protein 3 gamma precursor (Reg|
           III-gamma) (Pancreatitis-associated protein 3)
          Length = 174

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 285 LLLHEGQGHRRLTDVPSLFIQC*RGAKLFFSYLVLIF 175
           +LL + QG     DVP+  I C +G++ + SY   +F
Sbjct: 19  MLLSQVQGEDAKEDVPTSRISCPKGSRAYGSYCYALF 55



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>LITH_PIG (Q29191) Lithostathine precursor [Contains: Lithostathine A chain]|
           (Fragment)
          Length = 122

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 285 LLLHEGQGHRRLTDVPSLFIQC*RGAKLFFSYLVLIF 175
           +LL + QG     D PS  I C +G+  + SY   +F
Sbjct: 19  MLLSQVQGEDSPADTPSARISCPKGSMAYASYCYALF 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,408,399
Number of Sequences: 219361
Number of extensions: 597308
Number of successful extensions: 1327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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