Clone Name | rbastl12c04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_478037.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3125 Score = 133 bits (67), Expect = 4e-28 Identities = 112/127 (88%) Strand = Plus / Minus Query: 200 ccgagctcccaatgaaatattttctgaaatcttcttcgtccttgcaataaactgacatga 259 ||||||| |||| ||||||||| |||||| |||||||||||||||||| | ||||||| Sbjct: 2938 ccgagcttccaaggaaatatttgctgaaagcttcttcgtccttgcaatgctcggacatga 2879 Query: 260 ccttgtacacttcaattagcagctttggaaatcggcttgagaaatatcgatcaaatccct 319 ||| ||| |||| ||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct: 2878 cctcgtagactttaattagcagctttgggaatcggcttgagaaatactgaacaaatccct 2819 Query: 320 ccggcag 326 ||||||| Sbjct: 2818 ccggcag 2812 Score = 46.1 bits (23), Expect = 0.070 Identities = 29/31 (93%) Strand = Plus / Minus Query: 113 atatgatacagatcacatgtacatacatttt 143 ||||| |||| |||||||||||||||||||| Sbjct: 3039 atatggtacaaatcacatgtacatacatttt 3009
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 133 bits (67), Expect = 4e-28 Identities = 112/127 (88%) Strand = Plus / Minus Query: 200 ccgagctcccaatgaaatattttctgaaatcttcttcgtccttgcaataaactgacatga 259 ||||||| |||| ||||||||| |||||| |||||||||||||||||| | ||||||| Sbjct: 16821557 ccgagcttccaaggaaatatttgctgaaagcttcttcgtccttgcaatgctcggacatga 16821498 Query: 260 ccttgtacacttcaattagcagctttggaaatcggcttgagaaatatcgatcaaatccct 319 ||| ||| |||| ||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct: 16821497 cctcgtagactttaattagcagctttgggaatcggcttgagaaatactgaacaaatccct 16821438 Query: 320 ccggcag 326 ||||||| Sbjct: 16821437 ccggcag 16821431 Score = 46.1 bits (23), Expect = 0.070 Identities = 29/31 (93%) Strand = Plus / Minus Query: 113 atatgatacagatcacatgtacatacatttt 143 ||||| |||| |||||||||||||||||||| Sbjct: 16821658 atatggtacaaatcacatgtacatacatttt 16821628
>dbj|AP003806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1103_E04 Length = 111354 Score = 133 bits (67), Expect = 4e-28 Identities = 112/127 (88%) Strand = Plus / Minus Query: 200 ccgagctcccaatgaaatattttctgaaatcttcttcgtccttgcaataaactgacatga 259 ||||||| |||| ||||||||| |||||| |||||||||||||||||| | ||||||| Sbjct: 38124 ccgagcttccaaggaaatatttgctgaaagcttcttcgtccttgcaatgctcggacatga 38065 Query: 260 ccttgtacacttcaattagcagctttggaaatcggcttgagaaatatcgatcaaatccct 319 ||| ||| |||| ||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct: 38064 cctcgtagactttaattagcagctttgggaatcggcttgagaaatactgaacaaatccct 38005 Query: 320 ccggcag 326 ||||||| Sbjct: 38004 ccggcag 37998 Score = 46.1 bits (23), Expect = 0.070 Identities = 29/31 (93%) Strand = Plus / Minus Query: 113 atatgatacagatcacatgtacatacatttt 143 ||||| |||| |||||||||||||||||||| Sbjct: 38225 atatggtacaaatcacatgtacatacatttt 38195
>dbj|AK068617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155E19, full insert sequence Length = 3125 Score = 133 bits (67), Expect = 4e-28 Identities = 112/127 (88%) Strand = Plus / Minus Query: 200 ccgagctcccaatgaaatattttctgaaatcttcttcgtccttgcaataaactgacatga 259 ||||||| |||| ||||||||| |||||| |||||||||||||||||| | ||||||| Sbjct: 2938 ccgagcttccaaggaaatatttgctgaaagcttcttcgtccttgcaatgctcggacatga 2879 Query: 260 ccttgtacacttcaattagcagctttggaaatcggcttgagaaatatcgatcaaatccct 319 ||| ||| |||| ||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct: 2878 cctcgtagactttaattagcagctttgggaatcggcttgagaaatactgaacaaatccct 2819 Query: 320 ccggcag 326 ||||||| Sbjct: 2818 ccggcag 2812 Score = 46.1 bits (23), Expect = 0.070 Identities = 29/31 (93%) Strand = Plus / Minus Query: 113 atatgatacagatcacatgtacatacatttt 143 ||||| |||| |||||||||||||||||||| Sbjct: 3039 atatggtacaaatcacatgtacatacatttt 3009
>dbj|AB031396.1| Oryza sativa mRNA for OsIre1p, complete cds Length = 3121 Score = 133 bits (67), Expect = 4e-28 Identities = 112/127 (88%) Strand = Plus / Minus Query: 200 ccgagctcccaatgaaatattttctgaaatcttcttcgtccttgcaataaactgacatga 259 ||||||| |||| ||||||||| |||||| |||||||||||||||||| | ||||||| Sbjct: 2915 ccgagcttccaaggaaatatttgctgaaagcttcttcgtccttgcaatgctcggacatga 2856 Query: 260 ccttgtacacttcaattagcagctttggaaatcggcttgagaaatatcgatcaaatccct 319 ||| ||| |||| ||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct: 2855 cctcgtagactttaattagcagctttgggaatcggcttgagaaatactgaacaaatccct 2796 Query: 320 ccggcag 326 ||||||| Sbjct: 2795 ccggcag 2789 Score = 46.1 bits (23), Expect = 0.070 Identities = 29/31 (93%) Strand = Plus / Minus Query: 113 atatgatacagatcacatgtacatacatttt 143 ||||| |||| |||||||||||||||||||| Sbjct: 3016 atatggtacaaatcacatgtacatacatttt 2986
>gb|BT018574.1| Zea mays clone EL01N0443E08.d mRNA sequence Length = 1775 Score = 95.6 bits (48), Expect = 8e-17 Identities = 105/124 (84%) Strand = Plus / Minus Query: 202 gagctcccaatgaaatattttctgaaatcttcttcgtccttgcaataaactgacatgacc 261 ||||| ||| |||||| ||| |||||| |||||||||||||||| | || ||| |||| Sbjct: 1614 gagcttccattgaaatgtttactgaaagcttcttcgtccttgcagtgcacccacaagacc 1555 Query: 262 ttgtacacttcaattagcagctttggaaatcggcttgagaaatatcgatcaaatccctcc 321 |||||||| |||||||||| ||||||||||||||| | ||||| ||||||||||||| Sbjct: 1554 ttgtacacctcaattagcaactttggaaatcggctagcaaaatagtgatcaaatccctct 1495 Query: 322 ggca 325 |||| Sbjct: 1494 ggca 1491
>gb|AY111104.1| Zea mays CL54646_1 mRNA sequence Length = 1036 Score = 95.6 bits (48), Expect = 8e-17 Identities = 105/124 (84%) Strand = Plus / Plus Query: 202 gagctcccaatgaaatattttctgaaatcttcttcgtccttgcaataaactgacatgacc 261 ||||| ||| |||||| ||| |||||| |||||||||||||||| | || ||| |||| Sbjct: 280 gagcttccattgaaatgtttactgaaagcttcttcgtccttgcagtgcacccacaagacc 339 Query: 262 ttgtacacttcaattagcagctttggaaatcggcttgagaaatatcgatcaaatccctcc 321 |||||||| |||||||||| ||||||||||||||| | ||||| ||||||||||||| Sbjct: 340 ttgtacacctcaattagcaactttggaaatcggctagcaaaatagtgatcaaatccctct 399 Query: 322 ggca 325 |||| Sbjct: 400 ggca 403
>gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complete sequence Length = 191058 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 237 gtccttgcaataaactgacatgac 260 |||||||||||||||||||||||| Sbjct: 118094 gtccttgcaataaactgacatgac 118117
>gb|AE017263.1| Mesoplasma florum L1 complete genome Length = 793224 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 gagctcccaatgaaatatttt 222 ||||||||||||||||||||| Sbjct: 407965 gagctcccaatgaaatatttt 407985
>emb|AL136083.7| Human DNA sequence from clone RP3-501F10 on chromosome 6, complete sequence Length = 55198 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ttccttcaatggtaatatgat 119 ||||||||||||||||||||| Sbjct: 48007 ttccttcaatggtaatatgat 47987
>emb|BX324231.9| Zebrafish DNA sequence from clone DKEY-57H18 in linkage group 12, complete sequence Length = 17804 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 179 atgacatctgctttagttata 199 ||||||||||||||||||||| Sbjct: 4199 atgacatctgctttagttata 4179
>gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, complete sequence Length = 91296 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 atatgatacagatcacatgta 133 ||||||||||||||||||||| Sbjct: 35197 atatgatacagatcacatgta 35217
>gb|AC091894.2| Homo sapiens chromosome 5 clone RP11-138J23, complete sequence Length = 175552 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 atatgatacagatcacatgta 133 ||||||||||||||||||||| Sbjct: 4612 atatgatacagatcacatgta 4592
>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold Length = 1623484 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 1434498 acatgtacatacattttgct 1434517
>gb|AF067617.1| Caenorhabditis elegans cosmid T04D1, complete sequence Length = 28678 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 atattttctgaaatcttctt 235 |||||||||||||||||||| Sbjct: 366 atattttctgaaatcttctt 385
>gb|AC099631.6| Mus musculus chromosome 1, clone RP24-93F22, complete sequence Length = 185048 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 attttctgaaatcttcttcg 237 |||||||||||||||||||| Sbjct: 67261 attttctgaaatcttcttcg 67280
>gb|AC090112.2| Pan troglodytes clone RP43-75L6, complete sequence Length = 72751 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 18818 acatgtacatacattttgct 18837
>gb|AC087834.2| Pan troglodytes clone RP43-124I17, complete sequence Length = 165062 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 160642 acatgtacatacattttgct 160661
>gb|AC146421.2| Pan troglodytes BAC clone RP43-27J17 from 7, complete sequence Length = 178824 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 107446 acatgtacatacattttgct 107427
>ref|XM_452921.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C16137g predicted mRNA Length = 825 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 gaaatattttctgaaatcttcttc 236 ||||||| |||||||||||||||| Sbjct: 573 gaaatatcttctgaaatcttcttc 550
>gb|AC000111.1| Homo sapiens BAC clone CTB-68P20 from 7, complete sequence Length = 149554 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 116011 acatgtacatacattttgct 116030
>gb|AC124488.3| Mus musculus BAC clone RP23-452K20 from chromosome 1, complete sequence Length = 178446 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 actgtaacaatacagttctgtgta 57 ||||||| |||||||||||||||| Sbjct: 71152 actgtaaaaatacagttctgtgta 71129
>emb|AL590365.14| Human DNA sequence from clone RP11-455B2 on chromosome 10 Contains the gene for a novel thioesterase domain containing protein (FLJ11106), the gene for ribonuclease P (38kD) (RPP38), the gene for a novel protein (FLJ38219), the gene for a novel protein, the NMT2 gene for N-myristoyltransferase 2, the 3' end of the gene for a novel protein (LOC221061), a novel gene, a pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase (GAPD)(G3PD,GAPDH), a peptidylprolyl isomerase A (cyclophilin A) (PPIA)(CYPA,CYPH) pseudogene, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4)(MLRQ) pseudogene and three CpG islands, complete sequence Length = 194802 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 aaatattttctgaaatcttc 233 |||||||||||||||||||| Sbjct: 73004 aaatattttctgaaatcttc 72985
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 gaaatattttctgaaatcttcttc 236 ||||||| |||||||||||||||| Sbjct: 1409845 gaaatatcttctgaaatcttcttc 1409868
>gb|DQ388145.1| Homo sapiens isolate cftr13838_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) gene, complete cds; and CTTNBP2 (CTTNBP2) gene, partial cds Length = 422127 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 102478 acatgtacatacattttgct 102497
>gb|DQ388144.1| Homo sapiens isolate cftr13838_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 423518 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 103865 acatgtacatacattttgct 103884
>gb|DQ388143.1| Homo sapiens isolate cftr11589_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 460130 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 104325 acatgtacatacattttgct 104344
>gb|DQ388142.1| Homo sapiens isolate cftr11589_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 461372 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 104978 acatgtacatacattttgct 104997
>gb|DQ388141.1| Homo sapiens isolate cftr11521_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 459743 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 106854 acatgtacatacattttgct 106873
>gb|DQ388140.1| Homo sapiens isolate cftr11521_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 468331 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 112699 acatgtacatacattttgct 112718
>gb|DQ388139.1| Homo sapiens isolate cftr11376_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 480116 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 118711 acatgtacatacattttgct 118730
>gb|DQ388138.1| Homo sapiens isolate cftr11376_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 450881 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 109309 acatgtacatacattttgct 109328
>gb|DQ388135.1| Homo sapiens isolate cftr11321_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 429415 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 103125 acatgtacatacattttgct 103144
>gb|DQ388134.1| Homo sapiens isolate cftr11321_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 434687 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 108345 acatgtacatacattttgct 108364
>gb|DQ388137.1| Homo sapiens isolate cftr11373_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 411333 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 102054 acatgtacatacattttgct 102073
>gb|DQ388136.1| Homo sapiens isolate cftr11373_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) gene, partial cds; and CTTNBP2 (CTTNBP2) gene, complete cds Length = 446786 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 102054 acatgtacatacattttgct 102073
>gb|DQ388133.1| Homo sapiens isolate cftr10976_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 462987 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 105994 acatgtacatacattttgct 106013
>gb|DQ388132.1| Homo sapiens isolate cftr10976_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 456610 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 105160 acatgtacatacattttgct 105179
>gb|DQ388131.1| Homo sapiens isolate cftr10543_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 443905 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 102052 acatgtacatacattttgct 102071
>gb|DQ388130.1| Homo sapiens isolate cftr10543_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 459213 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 102063 acatgtacatacattttgct 102082
>gb|DQ388129.1| Homo sapiens isolate cftr10540_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 458144 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 102051 acatgtacatacattttgct 102070
>gb|DQ388128.1| Homo sapiens isolate cftr10540_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 451649 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 102067 acatgtacatacattttgct 102086
>gb|AC087173.5| Homo sapiens chromosome 8, clone RP11-713C9, complete sequence Length = 160250 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 tacattttgctaggtgaagg 155 |||||||||||||||||||| Sbjct: 18447 tacattttgctaggtgaagg 18428
>gb|AC090450.6| Homo sapiens chromosome 8, clone RP11-242M12, complete sequence Length = 166686 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tacattttgctaggtgaagg 155 |||||||||||||||||||| Sbjct: 83638 tacattttgctaggtgaagg 83657
>gb|AC090936.8| Homo sapiens chromosome 18, clone RP11-731I21, complete sequence Length = 151235 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 atgaaatattttctgaaatc 230 |||||||||||||||||||| Sbjct: 12247 atgaaatattttctgaaatc 12266
>gb|AC022176.6| Homo sapiens chromosome , clone RP11-149C3, complete sequence Length = 184026 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 atgaaatattttctgaaatc 230 |||||||||||||||||||| Sbjct: 39210 atgaaatattttctgaaatc 39191
>ref|NM_001025787.1| Caenorhabditis elegans B0041.7 (helicase) mRNA, complete cds Length = 4506 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 atattttctgaaatcttctt 235 |||||||||||||||||||| Sbjct: 1896 atattttctgaaatcttctt 1877
>gb|AC166600.4| Nomascus leucogenys leucogenys clone CH271-368I9, complete sequence Length = 179470 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 140936 acatgtacatacattttgct 140955
>gb|DQ356264.1| Homo sapiens isolate cftr14672_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 425451 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 105883 acatgtacatacattttgct 105902
>gb|DQ356263.1| Homo sapiens isolate cftr14672_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 458173 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 111005 acatgtacatacattttgct 111024
>gb|DQ356262.1| Homo sapiens isolate cftr14663_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 451123 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 104341 acatgtacatacattttgct 104360
>gb|DQ356261.1| Homo sapiens isolate cftr14663_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) gene, partial cds; and CTTNBP2 (CTTNBP2) gene, complete cds Length = 449665 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 106620 acatgtacatacattttgct 106639
>gb|DQ356260.1| Homo sapiens isolate cftr10975_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 447228 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 105985 acatgtacatacattttgct 106004
>gb|DQ356259.1| Homo sapiens isolate cftr10975_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 450685 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 105144 acatgtacatacattttgct 105163
>gb|DQ356258.1| Homo sapiens isolate cftr10471_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) gene, partial cds; and CTTNBP2 (CTTNBP2) gene, complete cds Length = 461061 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 90361 acatgtacatacattttgct 90380
>gb|DQ356257.1| Homo sapiens isolate cftr10471_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member 7 (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 495329 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 114640 acatgtacatacattttgct 114659
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cagattaatggttgagatct 87 |||||||||||||||||||| Sbjct: 27375866 cagattaatggttgagatct 27375847
>emb|BX841652.1|CNS09YJ8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS38ZG02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1115 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 gaaatattttctgaaatctt 232 |||||||||||||||||||| Sbjct: 77 gaaatattttctgaaatctt 58
>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold Length = 1819346 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 1346916 acatgtacatacattttgct 1346935
>gb|DQ354391.1| Homo sapiens isolate cftr01814_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 439798 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 116997 acatgtacatacattttgct 117016
>gb|DQ354390.1| Homo sapiens isolate cftr01814_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 437219 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 108359 acatgtacatacattttgct 108378
>gb|DQ354389.1| Homo sapiens isolate cftr14683_B cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 430078 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 103713 acatgtacatacattttgct 103732
>gb|DQ354388.1| Homo sapiens isolate cftr14683_A cystic fibrosis transmembrane conductance regulator ATP-binding cassette sub-family C member (CFTR) and CTTNBP2 (CTTNBP2) genes, complete cds Length = 461441 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatgtacatacattttgct 146 |||||||||||||||||||| Sbjct: 103873 acatgtacatacattttgct 103892
>dbj|AK196196.1| Mus musculus cDNA, clone:Y1G0121B17, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034876, based on BLAT search Length = 402 Score = 40.1 bits (20), Expect = 4.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 122 agatcacatgtacatac-attttgctag 148 ||||||||||||||||| |||||||||| Sbjct: 319 agatcacatgtacatactattttgctag 292
>dbj|AB022221.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSD23 Length = 33479 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 gaaatattttctgaaatctt 232 |||||||||||||||||||| Sbjct: 33406 gaaatattttctgaaatctt 33387
>gb|AF000196.1| Caenorhabditis elegans cosmid B0041, complete sequence Length = 28609 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 atattttctgaaatcttctt 235 |||||||||||||||||||| Sbjct: 26475 atattttctgaaatcttctt 26494
>emb|AL391262.3|CNS06C86 Human chromosome 14 DNA sequence BAC R-817G13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171296 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 agctcccaatgaaatattttctga 226 ||||||||| |||||||||||||| Sbjct: 109060 agctcccaaagaaatattttctga 109083
>gb|AF134186.1|AF134186 Caenorhabditis elegans XNP-1 (xnp-1) mRNA, complete cds Length = 4326 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 atattttctgaaatcttctt 235 |||||||||||||||||||| Sbjct: 1896 atattttctgaaatcttctt 1877
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cagattaatggttgagatct 87 |||||||||||||||||||| Sbjct: 27301466 cagattaatggttgagatct 27301447
>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124605 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cagattaatggttgagatct 87 |||||||||||||||||||| Sbjct: 44186 cagattaatggttgagatct 44167
>gb|AC132376.4| Mus musculus BAC clone RP24-80J23 from 1, complete sequence Length = 191858 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 attttctgaaatcttcttcg 237 |||||||||||||||||||| Sbjct: 126425 attttctgaaatcttcttcg 126444 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,221,581 Number of Sequences: 3902068 Number of extensions: 3221581 Number of successful extensions: 67705 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 67468 Number of HSP's gapped (non-prelim): 236 length of query: 328 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 306 effective length of database: 17,147,199,772 effective search space: 5247043130232 effective search space used: 5247043130232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)