ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12c03 |
|---|---|
| Clone Library Name | barley_pub |
>PIB2_YEAST (P53191) Protein PIB2| Length = 635 Score = 31.6 bits (70), Expect = 0.47 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +1 Query: 259 KRPHQSWLEKEQVEALPRPQNDASKKVNDAHPSFNAQQIQ*PSQ 390 K PHQ L K +E LP+P + + N N +QI P + Sbjct: 289 KPPHQQMLRKPSLEFLPQPASSTNLNFNSNKHKSNVRQISNPKK 332
>RL23A_ARATH (Q8LD46) 60S ribosomal protein L23a-1 (AtRPL23A-1)| Length = 154 Score = 31.6 bits (70), Expect = 0.47 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +2 Query: 200 TLHNKQVLCYPQRGKGPKIRNDPIKAGWRRNKWKHYQDLK 319 T H + L P+ GK PKI P RNK HYQ LK Sbjct: 43 TFHRPKTLTKPRTGKYPKISATP------RNKLDHYQILK 76
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 30.8 bits (68), Expect = 0.80 Identities = 20/80 (25%), Positives = 34/80 (42%) Frame = +1 Query: 109 QYKQKSQEEERTQHKPSRELHLAPICFMAMHTP*QTGSLLPTKR*GSKNPKRPHQSWLEK 288 Q +QK Q++++ Q +P A TP G+ P K ++PK Q + + Sbjct: 3406 QQQQKVQQQQQQQQQPK-----------ASQTPVPQGAASPDKDPAKESPKPEEQKNVPR 3454 Query: 289 EQVEALPRPQNDASKKVNDA 348 E LP+P + + A Sbjct: 3455 ELSPLLPKPPEEPEAESKSA 3474
>RL23B_ARATH (Q9M3C3) 60S ribosomal protein L23a-2| Length = 154 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +2 Query: 200 TLHNKQVLCYPQRGKGPKIRNDPIKAGWRRNKWKHYQDLK 319 T H + L P++ K PKI P RNK HYQ LK Sbjct: 43 TFHRPKTLTVPRKPKYPKISATP------RNKLDHYQILK 76
>REPB_THIFE (P27186) DNA primase (EC 2.7.7.-) (Replication primase)| Length = 352 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +1 Query: 22 Y*RIKLIQIDK-PCVYNNAMTNHRGCIYTHQYKQKSQEEERTQHKPSRELHLA 177 Y ++L++ ++ CV A+++ Y Q K+Q+ ERT+ KP+ EL A Sbjct: 174 YPEVRLLKAERRECVKALALSSQIDAEYQRQAALKAQQPERTKAKPALELAAA 226
>NELFD_MOUSE (Q922L6) Negative elongation factor D (NELF-D) (TH1-like protein)| Length = 591 Score = 28.9 bits (63), Expect = 3.0 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = +2 Query: 347 PIHLLMLNKFSSLHRMLHP 403 P+HL +L++ S+ H++LHP Sbjct: 450 PVHLALLDEISTCHQLLHP 468
>Y4691_PSEAE (Q9HVA5) UPF0191 membrane protein PA4691| Length = 202 Score = 28.9 bits (63), Expect = 3.0 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 9/65 (13%) Frame = -3 Query: 269 WGRFGF---LDPYLFVGSKEPVCYGVC------IAMKQIGARWSSLEGLCCVRSSSWLFC 117 WG+ G PY+ VG VC + AM+++G+RW L L + L Sbjct: 99 WGQLGIELSKRPYIIVGMLGFVCLFLLAITSNRFAMRKLGSRWKKLHRLVYLILGLGLLH 158 Query: 116 LYWCV 102 + W V Sbjct: 159 MLWVV 163
>NELFD_HUMAN (Q8IXH7) Negative elongation factor C/D (NELF-C/D) (TH1-like| protein) Length = 590 Score = 28.9 bits (63), Expect = 3.0 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = +2 Query: 347 PIHLLMLNKFSSLHRMLHP 403 P+HL +L++ S+ H++LHP Sbjct: 449 PVHLALLDEISTCHQLLHP 467
>DIG1_CAEEL (Q09165) Mesocentin precursor| Length = 13100 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +2 Query: 62 STITR*QTIEDAYTHTNTNRKAKKKNVHNISLQENST*RLFASWQCTLHNK 214 ++ TR T T +RKA K++ NI L S L SW C +NK Sbjct: 12791 ASTTRKSTTPKMTTLRPYDRKASKEDATNIELIPLSPSSLSVSWTCCTNNK 12841
>COBS_BRAJA (Q89Q75) Cobalamin synthase (EC 2.-.-.-)| Length = 260 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -3 Query: 209 YGVCIAMKQIGARWSSLEGLCCVRSSSWLFCLYWC 105 YGVC + G RWS+L + ++ WL L C Sbjct: 121 YGVCALILSFGLRWSALAAI----ANPWLVTLALC 151
>RCEM_RHOSH (P0C0Y9) Reaction center protein M chain (Photosynthetic reaction| center M subunit) Length = 307 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -3 Query: 350 WASFTFLEASF*GLGSASTCSFSSQL*-WGRFGFLDPYLFVGSKEPVCYGV 201 W T+L A G+G + +F S + W GF+ P L E V YG+ Sbjct: 129 WWGRTYLRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGI 179
>RCEM_RHOS4 (Q3J1A6) Reaction center protein M chain (Photosynthetic reaction| center M subunit) Length = 307 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -3 Query: 350 WASFTFLEASF*GLGSASTCSFSSQL*-WGRFGFLDPYLFVGSKEPVCYGV 201 W T+L A G+G + +F S + W GF+ P L E V YG+ Sbjct: 129 WWGRTYLRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGI 179
>RECQ1_PONPY (Q5RF63) ATP-dependent DNA helicase Q1 (EC 3.6.1.-) (DNA-dependent| ATPase Q1) Length = 649 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +3 Query: 141 YTT*AFKRTPPSAYLLHGNAHSITNRFF-ATHKEVRVQKSETTPSK 275 Y T ++ + P A LL+ AH+IT + +T RV+ S+T S+ Sbjct: 564 YATISYLKIGPKANLLNNEAHAITMQVTKSTQNSFRVESSQTCHSE 609
>YGB7_SCHPO (O74779) Protein C25B2.07c| Length = 501 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +3 Query: 171 PSAYLLHGNAHSITNRFFATHKEVRVQKSETTPS 272 PS+ +LH +AHS+T+ F+T ++ + +P+ Sbjct: 428 PSSSILHRHAHSLTSSSFSTKTLATTKEIQNSPT 461
>GLTA_BACSU (P39812) Glutamate synthase [NADPH] large chain (EC 1.4.1.13)| (NADPH-GOGAT) Length = 1520 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +1 Query: 265 PHQSWLEKEQVEALPRPQNDASKKVND 345 P+Q WLE+E V+ P P++ ++ +D Sbjct: 434 PYQKWLEEELVQVNPDPESREEEQFSD 460
>YCF1_OENHO (Q9MTH5) Hypothetical 287.9 kDa protein ycf1| Length = 2434 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +2 Query: 230 PQRGKGPKIRNDPIKAGWRRNKWKHYQDLKMTPPRR 337 P++ KGPK P K W R + H +K P++ Sbjct: 1235 PKKEKGPKKEKGPKKEPWYRRFFFHKDPMKEKGPKK 1270
>ITF2_MOUSE (Q60722) Transcription factor 4 (Immunoglobulin transcription| factor 2) (ITF-2) (MITF-2) (SL3-3 enhancer factor 2) (SEF-2) (Class A helix-loop-helix transcription factor ME2) Length = 670 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = +2 Query: 185 ASWQCTLHNKQVLCYPQRGKGPKIRNDPIKAGWRRNKWKHYQDLKMTPP 331 +S C+LH + L YP + P + + R+ HY TPP Sbjct: 250 SSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNHYSTSSCTPP 298
>RAD5_NEUCR (Q7S1P9) DNA repair protein rad-5 (EC 3.6.1.-)| Length = 1222 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/65 (29%), Positives = 29/65 (44%) Frame = +1 Query: 160 RELHLAPICFMAMHTP*QTGSLLPTKR*GSKNPKRPHQSWLEKEQVEALPRPQNDASKKV 339 ++LH AP + H+P G P K S+ R H +A P+PQ++ KV Sbjct: 182 KKLHRAPPVRVNSHSPLVVGGQSPKKSSTSQARSRSH--------AQAQPQPQSNTPTKV 233 Query: 340 NDAHP 354 + P Sbjct: 234 LPSMP 238
>ITR1_SCHPO (Q10286) Myo-inositol transporter 1| Length = 575 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/44 (27%), Positives = 22/44 (50%) Frame = -3 Query: 239 LFVGSKEPVCYGVCIAMKQIGARWSSLEGLCCVRSSSWLFCLYW 108 L + + + + YG+ A + + W + GL V ++ LF L W Sbjct: 223 LLITAGQVIAYGIDTAFEHVHNGWRWMVGLAMVPAAFQLFILIW 266
>ITF2_HUMAN (P15884) Transcription factor 4 (Immunoglobulin transcription| factor 2) (ITF-2) (SL3-3 enhancer factor 2) (SEF-2) Length = 667 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = +2 Query: 185 ASWQCTLHNKQVLCYPQRGKGPKIRNDPIKAGWRRNKWKHYQDLKMTPP 331 +S C+LH + L YP + P + + R+ HY TPP Sbjct: 251 SSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNHYSTSSCTPP 299
>T3JAM_MOUSE (Q8C0G2) TRAF3-interacting JNK-activating modulator| (TRAF3-interacting protein 3) Length = 513 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 217 GSLLPTKR*GSKNPKRPHQSWLEKEQVEALPRPQNDASKKVN 342 G P + K P R H+ K + EALP +NDAS++ N Sbjct: 145 GRAFPPQDSDIKKPHRQHRGTQTKAE-EALPTIKNDASQQTN 185
>ITF2_CANFA (P15881) Transcription factor 4 (Immunoglobulin transcription| factor 2) (ITF-2) (Thyroglobulin promoter transcription factor TFE) Length = 642 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = +2 Query: 185 ASWQCTLHNKQVLCYPQRGKGPKIRNDPIKAGWRRNKWKHYQDLKMTPP 331 +S C+LH + L YP + P + + R+ HY TPP Sbjct: 226 SSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNHYSTSSCTPP 274
>MUTS_RALEJ (Q473E4) DNA mismatch repair protein mutS| Length = 894 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 262 RPHQSWLEKEQVEALPRPQND 324 R H +WLE++ +A P PQ D Sbjct: 805 RKHLAWLEQQSADATPTPQLD 825
>ITF2_RAT (Q62655) Transcription factor 4 (Immunoglobulin transcription| factor 2) (ITF-2) (RITF-2) (SL3-3 enhancer factor 2) (SEF-2) (R8f DNA-binding protein) Length = 589 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = +2 Query: 185 ASWQCTLHNKQVLCYPQRGKGPKIRNDPIKAGWRRNKWKHYQDLKMTPP 331 +S C+LH + L YP + P + + R+ HY TPP Sbjct: 169 SSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNHYSTSSCTPP 217
>OREX_HUMAN (O43612) Orexin precursor (Hypocretin) (Hcrt) [Contains: Orexin-A| (Hypocretin-1) (Hcrt1); Orexin-B (Hypocretin-2) (Hcrt2)] Length = 131 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -2 Query: 294 LFLLQPALMGSFRIFGPLPLCG*QRTC 214 L LL PAL+ S PLP C Q+TC Sbjct: 19 LLLLPPALLSSGAAAQPLPDCCRQKTC 45
>RPOC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 4/27 (14%) Frame = +3 Query: 186 LHGNAHSITNRF----FATHKEVRVQK 254 L GN HSITNRF F T+K+V +K Sbjct: 821 LLGNLHSITNRFPSSHFLTYKKVLSKK 847
>SSRP_MYCPE (Q8EW52) SsrA-binding protein| Length = 146 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 203 LHNKQVLCYPQRGKGPKIRNDPIKAGWRRNKWK 301 LH +++ Y R K + P K WR+NK K Sbjct: 81 LHKNEIIKYQMRIKKESLTMVPSKIYWRKNKLK 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,817,121 Number of Sequences: 219361 Number of extensions: 1166577 Number of successful extensions: 2944 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2879 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2942 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
