ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 ... 34 0.15
2EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase E... 32 0.44
3MUTL_XYLFA (Q9PFB8) DNA mismatch repair protein mutL 30 1.7
4KIN31_CAEEL (P34265) Probable tyrosine-protein kinase kin-31 (EC... 30 2.2
5BORL3_ARATH (Q9SSG5) Putative boron transporter-like protein 3 29 3.7
6CJ095_HUMAN (Q9H7T3) Protein C10orf95 29 3.7
7XDH_DROSU (P91711) Xanthine dehydrogenase (EC 1.17.1.4) (XD) (Pr... 29 4.9
8DAX1_PIG (P79386) Nuclear receptor 0B1 (Nuclear receptor DAX-1) 29 4.9
9RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC... 28 6.4
10MUTL_XYLFT (Q87AC9) DNA mismatch repair protein mutL 28 6.4
11KAND_SCHPO (Q10078) Putative serine/threonine-protein kinase C3H... 28 6.4

>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC|
            2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2)
            (Protein VASCULAR HIGHWAY 1)
          Length = 1143

 Score = 33.9 bits (76), Expect = 0.15
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -2

Query: 396  EDQKTAGGTVSWELLA---LGMRCTADAPHERPDMPDVLAALLDIAGAAN 256
            E +   GG +  E+L    + +RC  D P +RP+M  V+A+L ++ G+ N
Sbjct: 1085 EKEGFEGGVIVKEMLRYLEIALRCVDDFPSKRPNMLQVVASLRELRGSEN 1134



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>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor|
            (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS
            MICROSPOROCYTES1 protein)
          Length = 1192

 Score = 32.3 bits (72), Expect = 0.44
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -2

Query: 357  LLALGMRCTADAPHERPDMPDVLAALLDI 271
            LL + M C A+ P +RP+M DVL AL +I
Sbjct: 1164 LLQIAMLCLAETPAKRPNMLDVLKALKEI 1192



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>MUTL_XYLFA (Q9PFB8) DNA mismatch repair protein mutL|
          Length = 619

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 190 EIGVHSRLQETKFITGNKIHSFVYKNAVA*LSLTSIGT 77
           ++ VH   QE +F     IH FVY+     L+ T  GT
Sbjct: 296 DVNVHPAKQEVRFRDARLIHDFVYRTVQGTLAQTRAGT 333



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>KIN31_CAEEL (P34265) Probable tyrosine-protein kinase kin-31 (EC 2.7.10.2)|
          Length = 437

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 360 ELLALGMRCTADAPHERPDMPDVLAALLDIAG 265
           E+ AL  RC A+ P++RP M DV   L  + G
Sbjct: 350 EVQALMTRCCAENPNDRPTMSDVAQILQRVTG 381



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>BORL3_ARATH (Q9SSG5) Putative boron transporter-like protein 3|
          Length = 683

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 158 KIHYRKQNSFLRVQKCGCLVEPDVHWNQGRAHVRNVGRSKDKKQSFW*KK 9
           ++ +R  NS   VQ+C   +  ++  ++G   VR +G ++DK    + K+
Sbjct: 620 ELSFRSNNSARGVQECDAEILDELTTSRGELKVRTLGHNEDKGHQIYPKE 669



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>CJ095_HUMAN (Q9H7T3) Protein C10orf95|
          Length = 257

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 389 KRRPAARCPGSCWRWACGARPTRLTSGR 306
           +RR A   P + W  ACGA PT  T+ +
Sbjct: 215 RRRRACSSPTTAWSGACGAGPTAATAAQ 242



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>XDH_DROSU (P91711) Xanthine dehydrogenase (EC 1.17.1.4) (XD) (Protein rosy|
            locus)
          Length = 1344

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 185  RCPFKVTGDKIHYRKQNSFLRVQKC--GCLVEPDVHWNQGRAHVRNVGRSKDKKQSFW*K 12
            R  F  TGD  HY +Q     +++C   CL        Q R H R    +K  +++ W K
Sbjct: 957  RLNFYRTGDTTHYNQQLEHFPIERCLDDCL-------TQSRYHERRAEIAKFNRENRWRK 1009

Query: 11   K 9
            +
Sbjct: 1010 R 1010



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>DAX1_PIG (P79386) Nuclear receptor 0B1 (Nuclear receptor DAX-1)|
          Length = 471

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 389 KRRPAARCPGSCWRWACGARP 327
           +  P AR  GSCW  +CG+ P
Sbjct: 27  REAPEARLRGSCWGCSCGSEP 47



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>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)|
          Length = 999

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 360  ELLALGMRCTADAPHERPDMPDVLAALLDIAGA 262
            +++ +G+ CT+  P  RP M  V+  L +++GA
Sbjct: 938  KVIHIGLLCTSPLPLNRPSMRKVVIMLQEVSGA 970



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>MUTL_XYLFT (Q87AC9) DNA mismatch repair protein mutL|
          Length = 619

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 190 EIGVHSRLQETKFITGNKIHSFVYKNAVA*LSLTSIGT 77
           ++ VH    E +F     IH FVY+     L+ T  GT
Sbjct: 296 DVNVHPAKHEVRFRDARLIHDFVYRTVQGTLAQTRAGT 333



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>KAND_SCHPO (Q10078) Putative serine/threonine-protein kinase C3H1.13 (EC|
           2.7.11.1)
          Length = 344

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 26  FASCLCSYLRYVHAPCPGSNGRQAQLSNRIFVHE 127
           + SCLC  L+Y+H    G + +Q ++++ I   E
Sbjct: 142 WCSCLCKALQYLHENVAGDSPKQPEVNDLIMFDE 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,722,605
Number of Sequences: 219361
Number of extensions: 872313
Number of successful extensions: 2462
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2461
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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