ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, com... 42 0.78
2emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 i... 42 0.78
3emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in ... 42 0.78
4dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 42 0.78
5gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cance... 40 3.1
6gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, com... 40 3.1
7emb|Z93397.1|CEZC482 Caenorhabditis elegans Cosmid ZC482, comple... 40 3.1
8ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 3.1
9ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 3.1
10dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome 40 3.1
11gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, com... 40 3.1
12gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, c... 40 3.1
13emb|CR556696.19| Zebrafish DNA sequence from clone CH211-80J13 i... 40 3.1
14emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 i... 40 3.1
15dbj|AP006372.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 3.1
16dbj|AP004546.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 3.1
17emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chr... 40 3.1 
>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence
          Length = 208850

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 108   tacacacttgatacatataca 128
             |||||||||||||||||||||
Sbjct: 48749 tacacacttgatacatataca 48729
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>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24,
              complete sequence
          Length = 143425

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 110    cacacttgatacatatacaaa 130
              |||||||||||||||||||||
Sbjct: 114349 cacacttgatacatatacaaa 114369



 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 110    cacacttgatacatatacaaa 130
              |||||||||||||||||||||
Sbjct: 104510 cacacttgatacatatacaaa 104530
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>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7, complete
              sequence
          Length = 181415

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 110    cacacttgatacatatacaaa 130
              |||||||||||||||||||||
Sbjct: 154850 cacacttgatacatatacaaa 154830
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>dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130006D24 product:unclassifiable, full
            insert sequence
          Length = 3651

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 108  tacacacttgatacatataca 128
            |||||||||||||||||||||
Sbjct: 2970 tacacacttgatacatataca 2990
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>gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205032

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    acacacttgatacatataca 128
              ||||||||||||||||||||
Sbjct: 184660 acacacttgatacatataca 184679
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>gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, complete sequence
          Length = 179807

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   acacacttgatacatataca 128
             ||||||||||||||||||||
Sbjct: 23843 acacacttgatacatataca 23862
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>emb|Z93397.1|CEZC482 Caenorhabditis elegans Cosmid ZC482, complete sequence
          Length = 36302

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aaactccacaaaaaattaac 25
             ||||||||||||||||||||
Sbjct: 20467 aaactccacaaaaaattaac 20448
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>ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101680.00.0)
           partial mRNA
          Length = 287

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 acatatacaaataagcttaa 139
           ||||||||||||||||||||
Sbjct: 213 acatatacaaataagcttaa 232
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>ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105151.00.0)
           partial mRNA
          Length = 984

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 cacttgatacatatacaaat 131
           ||||||||||||||||||||
Sbjct: 599 cacttgatacatatacaaat 618
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>dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome
          Length = 1166239

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      ctccacaaaaaattaacgag 28
              ||||||||||||||||||||
Sbjct: 718474 ctccacaaaaaattaacgag 718493
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>gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, complete sequence
          Length = 131548

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    cagttctaaagatgtaactt 103
             ||||||||||||||||||||
Sbjct: 64502 cagttctaaagatgtaactt 64521
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>gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, complete sequence
          Length = 162101

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    cagttctaaagatgtaactt 103
             ||||||||||||||||||||
Sbjct: 67063 cagttctaaagatgtaactt 67044
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>emb|CR556696.19| Zebrafish DNA sequence from clone CH211-80J13 in linkage group 20,
             complete sequence
          Length = 130645

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tgtgctagtgaatgacaacg 77
             ||||||||||||||||||||
Sbjct: 71131 tgtgctagtgaatgacaacg 71112
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>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5,
             complete sequence
          Length = 209796

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   tacacacttgatacatatac 127
             ||||||||||||||||||||
Sbjct: 49955 tacacacttgatacatatac 49936
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>dbj|AP006372.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT36C05, TM0215b,
             complete sequence
          Length = 84914

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 52    acatactgtgctagtgaatgacaa 75
             |||||||||| |||||||||||||
Sbjct: 74278 acatactgtgttagtgaatgacaa 74255
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>dbj|AP004546.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43N05, TM0178,
             complete sequence
          Length = 97268

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 52    acatactgtgctagtgaatgacaa 75
             |||||||||| |||||||||||||
Sbjct: 40708 acatactgtgttagtgaatgacaa 40685
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>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete
             sequence
          Length = 221374

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   acacacttgatacatataca 128
             ||||||||||||||||||||
Sbjct: 64556 acacacttgatacatataca 64575


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,435,582
Number of Sequences: 3902068
Number of extensions: 2435582
Number of successful extensions: 41167
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41114
Number of HSP's gapped (non-prelim): 53
length of query: 240
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 218
effective length of database: 17,147,199,772
effective search space: 3738089550296
effective search space used: 3738089550296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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