ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAMA4_HUMAN (Q16363) Laminin alpha-4 chain precursor 29 3.7
2LRIG1_MOUSE (P70193) Leucine-rich repeats and immunoglobulin-lik... 28 6.3

>LAMA4_HUMAN (Q16363) Laminin alpha-4 chain precursor|
          Length = 1823

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 105  DSSKWLPLG-KLPKLSVTAAGKHCHLKHSPQQVA---ALSGTAGQR 230
            D+  W P+  KLP+ + T    HCHL +SP+ +       GTA  R
Sbjct: 1435 DAPSWDPVALKLPERN-TPRNSHCHLSNSPRAIEHAYQYGGTANSR 1479



to top

>LRIG1_MOUSE (P70193) Leucine-rich repeats and immunoglobulin-like domains protein|
            1 precursor (LIG-1)
          Length = 1091

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 53   IHFSNC---KLSLSISKELVGQFKMVAPWKATKIVSHRCRQTLSPETFATTGSCLVRDSR 223
            IH + C   KL +  ++E         PWK T+    +  +T +P T A +GS +  D  
Sbjct: 889  IHSTTCRQPKLCVGYTRE---------PWKVTE----KADRTAAPHTTAHSGSAVCSDCS 935

Query: 224  TETS 235
            T+T+
Sbjct: 936  TDTA 939


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,615,902
Number of Sequences: 219361
Number of extensions: 613458
Number of successful extensions: 1459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top