ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PER45_ARATH (Q96522) Peroxidase 45 precursor (EC 1.11.1.7) (Atpe... 32 0.30
2ALR3_RHILO (Q981H7) Alanine racemase 3 (EC 5.1.1.1) 29 3.3
3ALR1_RHILO (Q98A05) Alanine racemase, biosynthetic (EC 5.1.1.1) 28 4.4
4REXO3_CANGA (Q6FIU7) RNA exonuclease 3 (EC 3.1.-.-) 28 4.4
5ECM18_YEAST (Q04623) Extracellular matrix protein 18 28 7.4
6ATC5_YEAST (P32660) Probable phospholipid-transporting ATPase DN... 27 9.7

>PER45_ARATH (Q96522) Peroxidase 45 precursor (EC 1.11.1.7) (Atperox P45)|
           (ATP8a)
          Length = 325

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 1   KNTNKQFFLNFCIRHRNETCISISMYTKFSSIQTPNLRVILPTQSRNRAYPPNQKTFLT 177
           KNT++  F NF +     +C+S  + T F     PN+  I+    RN      Q+TF+T
Sbjct: 3   KNTSQTIFSNFFLLLLLSSCVSAQLRTGFYQNSCPNVETIV----RNAVRQKFQQTFVT 57



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>ALR3_RHILO (Q981H7) Alanine racemase 3 (EC 5.1.1.1)|
          Length = 388

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 8   QTSNFS*TSVSGIGTKHASPFQCTQNSVRFRLQIYESFFLHRVEIEPI 151
           +T   S  +++GIG KH  P+ C  N +  R   Y +  + RV +E I
Sbjct: 261 RTGRASRLAIAGIGYKHGLPWACA-NKISVRFAGYSAPLVGRVSMEYI 307



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>ALR1_RHILO (Q98A05) Alanine racemase, biosynthetic (EC 5.1.1.1)|
          Length = 397

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 8   QTSNFS*TSVSGIGTKHASPFQCTQNSVRFRLQIYESFFLHRVEIE 145
           +T   S  ++ GIG KH  P+ C  N +  RL  Y +  + R+ +E
Sbjct: 262 RTDRASRVAIVGIGYKHGLPWSCA-NKIFVRLAEYSAPSIGRISME 306



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>REXO3_CANGA (Q6FIU7) RNA exonuclease 3 (EC 3.1.-.-)|
          Length = 398

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +2

Query: 119 FFLHRVEIEPIHPIRRHF*LFN----FSKQ*LMQSTSAELYPA*HQRESSTASVFYPLC 283
           + L  V+ EP  P+  H         FSK+ +M S   + +P+    + ST    YP C
Sbjct: 133 YILPDVKYEPQQPVSSHVTCVRCGTKFSKEDIMNSVVCKFHPSKKLYDKSTKLEIYPCC 191



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>ECM18_YEAST (Q04623) Extracellular matrix protein 18|
          Length = 453

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 53  KHASPFQCTQNSVRFRLQIYESFFLHRVE 139
           K   P+    N  +F +Q+YE F+L R+E
Sbjct: 191 KFKVPYTINANHNKFVIQMYEDFYLDRIE 219



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>ATC5_YEAST (P32660) Probable phospholipid-transporting ATPase DNF1 (EC 3.6.3.1)|
          Length = 1571

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 147  LSTQSEDIFNSSTLVSSNSCRVLLQSSIQPDIKGSRVRLQFSILSVFACCVGD 305
            L+   EDI     L+  N CR +L   + P  K + V+L    L V    +GD
Sbjct: 1079 LALYGEDIRRKFLLLCKN-CRAVLCCRVSPSQKAAVVKLVKDSLDVMTLAIGD 1130


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,825,455
Number of Sequences: 219361
Number of extensions: 587259
Number of successful extensions: 1522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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