ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469973.1| Oryza sativa (japonica cultivar-group), mRNA 66 5e-08
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 5e-08
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 5e-08
4gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genom... 66 5e-08
5dbj|AK099884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 5e-08
6dbj|AK069591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 5e-08
7gb|BT019199.1| Zea mays clone Contig872.F mRNA sequence 54 2e-04
8gb|AY104601.1| Zea mays PCO085879 mRNA sequence 54 2e-04
9emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in... 44 0.20
10emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chro... 42 0.78
11gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosom... 42 0.78
12emb|BX571832.5| Zebrafish DNA sequence from clone DKEY-256O13 in... 42 0.78
13gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8,... 42 0.78
14dbj|AB084905.1| Paralichthys olivaceus mRNA for perforin, comple... 42 0.78
15emb|BX546483.5| Mouse DNA sequence from clone RP24-121F2 on chro... 42 0.78
16gb|AY122330.2| Cherry rasp leaf virus segment RNA-2, complete se... 42 0.78
17gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, c... 42 0.78
18gb|BT016441.1| Zea mays clone Contig274 mRNA sequence 40 3.1
19gb|AE013103.1| Thermoanaerobacter tengcongensis MB4, section 130... 40 3.1
20gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, com... 40 3.1
21gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, compl... 40 3.1
22gb|AC131151.2| Homo sapiens 3 BAC RP11-219E24 (Roswell Park Canc... 40 3.1
23emb|CR628331.7| Zebrafish DNA sequence from clone DKEY-208C12 in... 40 3.1
24ref|XM_651790.1| Entamoeba histolytica HM-1:IMSS Sec7 domain pro... 40 3.1
25emb|AL122019.28|HSJ831A12 Human DNA sequence from clone RP5-831A... 40 3.1
26emb|AL022157.1|HS323P24 Human DNA sequence from clone RP3-323P24... 40 3.1
27gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, com... 40 3.1
28gb|AC020589.4| Homo sapiens BAC clone RP11-143G24 from 4, comple... 40 3.1
29gb|AC154862.2| Mus musculus BAC clone RP23-8G7 from 13, complete... 40 3.1
30emb|Z82211.1|HS447N6 Human DNA sequence from clone RP3-447N6 on ... 40 3.1
31gb|BT024078.1| Zea mays clone EL01N0521E04 mRNA sequence 40 3.1
32emb|CT010486.13| Mouse DNA sequence from clone RP23-129J22 on ch... 40 3.1
33gb|AC161527.18| Mus musculus chromosome 3, clone RP23-174B21, co... 40 3.1 
>ref|XM_469973.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2851

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 111  aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 169
            ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 2716 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2658

                                             
Query: 170  gcttcccaaagagtacagcttattaccacctga 202
            ||||||| ||| ||| |||||||| ||||||||
Sbjct: 2657 gcttccc-aagggtaaagcttattgccacctga 2626
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                            
Query: 111      aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 169
                ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 33129008 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 33128950

                                                 
Query: 170      gcttcccaaagagtacagcttattaccacctga 202
                ||||||| ||| ||| |||||||| ||||||||
Sbjct: 33128949 gcttccc-aagggtaaagcttattgccacctga 33128918
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                            
Query: 111      aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 169
                ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 33219518 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 33219460

                                                 
Query: 170      gcttcccaaagagtacagcttattaccacctga 202
                ||||||| ||| ||| |||||||| ||||||||
Sbjct: 33219459 gcttccc-aagggtaaagcttattgccacctga 33219428
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>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete
              sequence
          Length = 144487

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                          
Query: 111    aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 169
              ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 115547 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 115605

                                               
Query: 170    gcttcccaaagagtacagcttattaccacctga 202
              ||||||| ||| ||| |||||||| ||||||||
Sbjct: 115606 gcttccc-aagggtaaagcttattgccacctga 115637
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>dbj|AK099884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111P21, full
            insert sequence
          Length = 2931

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 111  aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 169
            ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 2808 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2750

                                             
Query: 170  gcttcccaaagagtacagcttattaccacctga 202
            ||||||| ||| ||| |||||||| ||||||||
Sbjct: 2749 gcttccc-aagggtaaagcttattgccacctga 2718
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>dbj|AK069591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023M08, full
            insert sequence
          Length = 3011

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 111  aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 169
            ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 2876 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2818

                                             
Query: 170  gcttcccaaagagtacagcttattaccacctga 202
            ||||||| ||| ||| |||||||| ||||||||
Sbjct: 2817 gcttccc-aagggtaaagcttattgccacctga 2786
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>gb|BT019199.1| Zea mays clone Contig872.F mRNA sequence
          Length = 1093

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 52/59 (88%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 145 acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 202
           ||||||||| ||||||||||||||| ||| |||||||   |||||||||| ||||||||
Sbjct: 983 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctga 925
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>gb|AY104601.1| Zea mays PCO085879 mRNA sequence
          Length = 1686

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 52/59 (88%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                       
Query: 145  acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 202
            ||||||||| ||||||||||||||| ||| |||||||   |||||||||| ||||||||
Sbjct: 1421 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctga 1363
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>emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in linkage group 8,
              complete sequence
          Length = 182233

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 97     tgcaaaataactagaagaaaaa 118
              ||||||||||||||||||||||
Sbjct: 159389 tgcaaaataactagaagaaaaa 159410
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>emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chromosome 12, complete
             sequence
          Length = 216921

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    agtctgataaatataaatatg 63
             |||||||||||||||||||||
Sbjct: 45732 agtctgataaatataaatatg 45712
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>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete
             sequence
          Length = 205862

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    agtctgataaatataaatatg 63
             |||||||||||||||||||||
Sbjct: 28527 agtctgataaatataaatatg 28547
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>emb|BX571832.5| Zebrafish DNA sequence from clone DKEY-256O13 in linkage group 17,
             complete sequence
          Length = 109705

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 100   aaaataactagaagaaaaaggaata 124
             ||||||| |||||||||||||||||
Sbjct: 86074 aaaataagtagaagaaaaaggaata 86098
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>gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8, complete sequence
          Length = 197900

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 162    agacctgagcttcccaaagag 182
              |||||||||||||||||||||
Sbjct: 183590 agacctgagcttcccaaagag 183570
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>dbj|AB084905.1| Paralichthys olivaceus mRNA for perforin, complete cds
          Length = 2177

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 agcttcccaaagagtacagct 189
           |||||||||||||||||||||
Sbjct: 688 agcttcccaaagagtacagct 708
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>emb|BX546483.5| Mouse DNA sequence from clone RP24-121F2 on chromosome X, complete
            sequence
          Length = 74439

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 98   gcaaaataactagaagaaaaaggaa 122
            |||||||| ||||||||||||||||
Sbjct: 5438 gcaaaatacctagaagaaaaaggaa 5414
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>gb|AY122330.2| Cherry rasp leaf virus segment RNA-2, complete sequence
          Length = 3318

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 105  aactagaagaaaaaggaatat 125
            |||||||||||||||||||||
Sbjct: 2429 aactagaagaaaaaggaatat 2409
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>gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, complete sequence
          Length = 148280

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 162   agacctgagcttcccaaagag 182
             |||||||||||||||||||||
Sbjct: 29884 agacctgagcttcccaaagag 29864
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>gb|BT016441.1| Zea mays clone Contig274 mRNA sequence
          Length = 1532

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 51/59 (86%), Gaps = 3/59 (5%)
 Strand = Plus / Minus

                                                                       
Query: 145  acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 202
            ||||||||| ||||||||||||||| |||  ||||  || |||||||||| ||||||||
Sbjct: 1430 acacaagtaatcctgtacagacctgtgctcaccaa--aggacagcttattgccacctga 1374
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>gb|AE013103.1| Thermoanaerobacter tengcongensis MB4, section 130 of 244 of the
            complete genome
          Length = 6228

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  aactagaagaaaaaggaata 124
            ||||||||||||||||||||
Sbjct: 3604 aactagaagaaaaaggaata 3585
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>gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, complete sequence
          Length = 164107

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 212   gtaagtaacccaaacattgtagct 235
             ||||||||||||| ||||||||||
Sbjct: 59126 gtaagtaacccaatcattgtagct 59103
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>gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, complete sequence
          Length = 245784

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   aactagaagaaaaaggaata 124
             ||||||||||||||||||||
Sbjct: 75511 aactagaagaaaaaggaata 75530
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>gb|AC131151.2| Homo sapiens 3 BAC RP11-219E24 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 109988

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 43   agtctgataaatataaatat 62
            ||||||||||||||||||||
Sbjct: 5690 agtctgataaatataaatat 5709
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>emb|CR628331.7| Zebrafish DNA sequence from clone DKEY-208C12 in linkage group 17,
             complete sequence
          Length = 92644

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    tctgataaatataaatatgt 64
             ||||||||||||||||||||
Sbjct: 27093 tctgataaatataaatatgt 27112
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>ref|XM_651790.1| Entamoeba histolytica HM-1:IMSS Sec7 domain protein (7.t00042)
            partial mRNA
          Length = 4983

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  aactagaagaaaaaggaata 124
            ||||||||||||||||||||
Sbjct: 1688 aactagaagaaaaaggaata 1707
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>emb|AL122019.28|HSJ831A12 Human DNA sequence from clone RP5-831A12 on chromosome 1q24.1-25.3,
             complete sequence
          Length = 110539

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ctagaagaaaaaggaatata 126
             ||||||||||||||||||||
Sbjct: 73615 ctagaagaaaaaggaatata 73634
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>emb|AL022157.1|HS323P24 Human DNA sequence from clone RP3-323P24 on chromosome Xp11.21-11.23
             Contains the gene for spindlin-like protein 2 (SPIN2), the
             gene for a novel protein similar to SPIN2 and a novel
             gene, complete sequence
          Length = 80611

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    ataaatataaatatgtactc 68
             ||||||||||||||||||||
Sbjct: 74840 ataaatataaatatgtactc 74859
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>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence
          Length = 139773

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  aactagaagaaaaaggaata 124
            ||||||||||||||||||||
Sbjct: 2875 aactagaagaaaaaggaata 2856
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>gb|AC020589.4| Homo sapiens BAC clone RP11-143G24 from 4, complete sequence
          Length = 147185

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    tgataaatataaatatgtac 66
             ||||||||||||||||||||
Sbjct: 84175 tgataaatataaatatgtac 84156
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>gb|AC154862.2| Mus musculus BAC clone RP23-8G7 from 13, complete sequence
          Length = 205028

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     ttgcaaaataactagaagaa 115
              ||||||||||||||||||||
Sbjct: 203038 ttgcaaaataactagaagaa 203019
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>emb|Z82211.1|HS447N6 Human DNA sequence from clone RP3-447N6 on chromosome X, complete
             sequence
          Length = 132229

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    ataaatataaatatgtactc 68
             ||||||||||||||||||||
Sbjct: 68832 ataaatataaatatgtactc 68813
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>gb|BT024078.1| Zea mays clone EL01N0521E04 mRNA sequence
          Length = 2855

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 51/59 (86%), Gaps = 3/59 (5%)
 Strand = Plus / Minus

                                                                       
Query: 145  acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 202
            ||||||||| ||||||||||||||| |||  ||||  || |||||||||| ||||||||
Sbjct: 2747 acacaagtaatcctgtacagacctgtgctcaccaa--aggacagcttattgccacctga 2691
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>emb|CT010486.13| Mouse DNA sequence from clone RP23-129J22 on chromosome 13, complete
              sequence
          Length = 199574

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     ttgcaaaataactagaagaa 115
              ||||||||||||||||||||
Sbjct: 163989 ttgcaaaataactagaagaa 164008
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>gb|AC161527.18| Mus musculus chromosome 3, clone RP23-174B21, complete sequence
          Length = 207130

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     ataaattaatcaaaacacca 43
              ||||||||||||||||||||
Sbjct: 194423 ataaattaatcaaaacacca 194442


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,089,950
Number of Sequences: 3902068
Number of extensions: 3089950
Number of successful extensions: 83303
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 83219
Number of HSP's gapped (non-prelim): 86
length of query: 240
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 218
effective length of database: 17,147,199,772
effective search space: 3738089550296
effective search space used: 3738089550296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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