>WFDC2_RAT (Q8CHN3) WAP four-disulfide core domain protein 2 precursor|
           (Epididymal secretory protein 4) (RE4)
          Length = 168

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 208 GICFQLEPMVDVAS*FVCLLDCSCEASYR 122
           G+C QLEP+ D      C+LD  C+ +Y+
Sbjct: 34  GVCPQLEPITDCVK--ACILDNDCQDNYK 60

>VCAP_EHV1V (Q6S6S9) Major capsid protein (MCP) (Capsid protein VP5)|
          Length = 1376

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 167 GGH-VHHRLKLKTNSGNQICHH*SSDLYVLGCSYATGLSPSLPVGYDCTVLARHD 328
           GGH VH+R     N  N I  H   +  VL   Y   + P+   G  CT+  R+D
Sbjct: 780 GGHLVHNRPIRGENKRNPIVPHHDPEWSVLSKIYYYAVVPAFSRGNCCTMGVRYD 834

>VCAP_EHV1B (P28920) Major capsid protein (MCP) (Capsid protein VP5)|
          Length = 1376

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 167 GGH-VHHRLKLKTNSGNQICHH*SSDLYVLGCSYATGLSPSLPVGYDCTVLARHD 328
           GGH VH+R     N  N I  H   +  VL   Y   + P+   G  CT+  R+D
Sbjct: 780 GGHLVHNRPIRGENKRNPIVPHHDPEWSVLSKIYYYAVVPAFSRGNCCTMGVRYD 834

>RFC_SHIDY (Q03584) O-antigen polymerase|
          Length = 380

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 272 GLSPSLPVGYDCTVLARHDN 331
           GL  SLP+ + C  LARH+N
Sbjct: 137 GLGISLPLSFCCMYLARHEN 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,402,353
Number of Sequences: 219361
Number of extensions: 861470
Number of successful extensions: 2001
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2000
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)