ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LY86_HUMAN (O95711) Lymphocyte antigen 86 precursor (MD-1 protein) 30 1.3
2CISY_SCHPO (Q10306) Probable citrate synthase, mitochondrial pre... 30 1.7
3Y378_BORBU (O50165) Hypothetical protein BB0378 28 4.9

>LY86_HUMAN (O95711) Lymphocyte antigen 86 precursor (MD-1 protein)|
          Length = 162

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 177 FLDIGVMIPSHSVFGPSYSVCEAFLPGLGPC 85
           FLD+ +M    SV   SY +CEA LP    C
Sbjct: 82  FLDLALMSQGSSVLNFSYPICEAALPKFSFC 112



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>CISY_SCHPO (Q10306) Probable citrate synthase, mitochondrial precursor (EC|
           2.3.3.1)
          Length = 473

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +1

Query: 67  KHDIGDTRSKSWKESFTYRIAWSKN*MTGYHHPYIQKLQTKYSAEK 204
           K +IGD  S+   +S+ +++  S   + GY H  ++K   +Y+A++
Sbjct: 325 KKEIGDDLSEETIKSYLWKLLNSGRVVPGYGHAVLRKTDPRYTAQR 370



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>Y378_BORBU (O50165) Hypothetical protein BB0378|
          Length = 220

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 216 SSQLFFRRVLCLQFLD-IGVMIPSHSVFGPSYSVCEAFLPGLGPCITDVVFV 64
           +  LFF   L  QF   +GV +  +  FG  +++   FLP   P   +++F+
Sbjct: 40  TQDLFFYERLKYQFFSGVGVNVSQNLAFGGEFNLDIKFLPSHTPYTNEIIFM 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,583,107
Number of Sequences: 219361
Number of extensions: 586742
Number of successful extensions: 1596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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