ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12a10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY494984.1| Triticum aestivum LON1 protease mRNA, complete cds Length = 3143 Score = 355 bits (179), Expect = 4e-95 Identities = 201/207 (97%), Gaps = 1/207 (0%) Strand = Plus / Minus Query: 21 atgatactgcaacattcaattctccctggctgaaataggttacatatacacccaaaccga 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3103 atgatactgcaacattcaattctccctggctgaaataggttacatatacacccaaaccga 3044 Query: 81 caacaacaggtggatctccttgctaccaataccaaaccgagcatagatagatgagcatcc 140 |||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 3043 caacaacaggtggacctccttgctacca-tagcaaaccgagcatagatagatgagcatcc 2985 Query: 141 ctctataaatacaagcacaaagaccggagcagatctccctgccgcttttgtggatagcaa 200 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 2984 ctctataaatacaatcacaaagaccagagcagatctccctgccgcttttgtggatagcaa 2925 Query: 201 gtacccatatacacattccgcatatta 227 ||| ||||||||||||||||||||||| Sbjct: 2924 gtatccatatacacattccgcatatta 2898
>gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, complete sequence Length = 202155 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 actgcaacattcaattctccc 46 ||||||||||||||||||||| Sbjct: 80340 actgcaacattcaattctccc 80320
>gb|AC140791.4| Gallus gallus BAC clone TAM33-20G4 from chromosome ul, complete sequence Length = 219854 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 atagatagatgagcatccctc 143 ||||||||||||||||||||| Sbjct: 6522 atagatagatgagcatccctc 6502
>gb|AE000665.1|MMAE000665 Mus musculus TCR beta locus from bases 501860 to 700960 (section 3 of 3) of the complete sequence Length = 199101 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gcttttgtggatagcaagta 203 |||||||||||||||||||| Sbjct: 194392 gcttttgtggatagcaagta 194373
>gb|AC117678.16| Mus musculus chromosome 6, clone RP23-421M9, complete sequence Length = 204437 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gcttttgtggatagcaagta 203 |||||||||||||||||||| Sbjct: 96556 gcttttgtggatagcaagta 96537
>emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n9, COMPLETE SEQUENCE Length = 119528 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cctctataaatacaagcaca 159 |||||||||||||||||||| Sbjct: 9634 cctctataaatacaagcaca 9615
>gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete sequence Length = 85905 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 cctctataaatacaagcaca 159 |||||||||||||||||||| Sbjct: 64740 cctctataaatacaagcaca 64759 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 cctctataaatacaagcaca 159 |||||||||||||||||||| Sbjct: 55200 cctctataaatacaagcaca 55219
>gb|AF336378.1| Mus musculus Kel blood group protein (Kel), epithelial calcium channel 1 (Ecac1), epithelial calcium channel 2 (Ecac2), and ephrin type A receptor (Mep) genes, complete cds; and T cell receptor beta chain (Tcr) gene, partial cds Length = 169781 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gcttttgtggatagcaagta 203 |||||||||||||||||||| Sbjct: 142129 gcttttgtggatagcaagta 142148
>emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5, COMPLETE SEQUENCE Length = 106640 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cctctataaatacaagcaca 159 |||||||||||||||||||| Sbjct: 105678 cctctataaatacaagcaca 105659 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cctctataaatacaagcaca 159 |||||||||||||||||||| Sbjct: 96032 cctctataaatacaagcaca 96013 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,773,788 Number of Sequences: 3902068 Number of extensions: 1773788 Number of successful extensions: 103242 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103220 Number of HSP's gapped (non-prelim): 21 length of query: 227 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 205 effective length of database: 17,147,199,772 effective search space: 3515175953260 effective search space used: 3515175953260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
