Clone Name | rbastl12a09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 77.8 bits (39), Expect = 2e-11 Identities = 48/51 (94%) Strand = Plus / Minus Query: 129 acaactttattacatcatcctgatacatatcaacattagtagtctttttcg 179 |||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct: 212855 acaactttctaacatcatcctgatacatatcaacattagaagtctttttcg 212805
>ref|XM_913045.2| PREDICTED: Mus musculus similar to putative pheromone receptor (Go-VN5) (LOC637382), mRNA Length = 3168 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 tcctgttctccatcatgaaga 51 ||||||||||||||||||||| Sbjct: 35 tcctgttctccatcatgaaga 55
>emb|CT009574.5| Mouse DNA sequence from clone RP23-140H11 on chromosome 17, complete sequence Length = 204822 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 tcctgttctccatcatgaaga 51 ||||||||||||||||||||| Sbjct: 138623 tcctgttctccatcatgaaga 138603
>gb|AC151273.2| Mus musculus BAC clone RP24-237J7 from chromosome 17, complete sequence Length = 143288 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 tcctgttctccatcatgaaga 51 ||||||||||||||||||||| Sbjct: 45613 tcctgttctccatcatgaaga 45633
>gb|BT012939.1| Lycopersicon esculentum clone 114107R, mRNA sequence Length = 1303 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gtgcactcttcagctctttc 220 |||||||||||||||||||| Sbjct: 33 gtgcactcttcagctctttc 52
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tcattttcaagggttgatga 94 |||||||||||||||||||| Sbjct: 2821759 tcattttcaagggttgatga 2821740
>gb|AC111137.10| Mus musculus chromosome 5, clone RP23-357C4, complete sequence Length = 197271 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ctaaaatgtttgcacaacaa 243 |||||||||||||||||||| Sbjct: 147149 ctaaaatgtttgcacaacaa 147168
>emb|X63560.1|LESHKINP L.esculentum mRNA for shikimate kinase precursor Length = 1293 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gtgcactcttcagctctttc 220 |||||||||||||||||||| Sbjct: 61 gtgcactcttcagctctttc 80
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2 Length = 197975 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 aacctaaaatgtttgcacaa 240 |||||||||||||||||||| Sbjct: 21627 aacctaaaatgtttgcacaa 21646
>gb|AC107964.4| Homo sapiens chromosome 8, clone CTD-2328I8, complete sequence Length = 138594 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 acctgaacaagaatatcatt 22 |||||||||||||||||||| Sbjct: 96680 acctgaacaagaatatcatt 96699
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tcattttcaagggttgatga 94 |||||||||||||||||||| Sbjct: 2821870 tcattttcaagggttgatga 2821851
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tcattttcaagggttgatga 94 |||||||||||||||||||| Sbjct: 93715 tcattttcaagggttgatga 93696
>dbj|AK110807.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F01, full insert sequence Length = 1400 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tcattttcaagggttgatga 94 |||||||||||||||||||| Sbjct: 554 tcattttcaagggttgatga 535
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 Length = 91849 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 aacctaaaatgtttgcacaa 240 |||||||||||||||||||| Sbjct: 2753 aacctaaaatgtttgcacaa 2772
>emb|AL136332.5|CNS01DW4 Human chromosome 14 DNA sequence BAC R-807G16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209157 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ctaaaatgtttgcacaacaa 243 |||||||||||||||||||| Sbjct: 87297 ctaaaatgtttgcacaacaa 87316
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tctttttcggattttcagaa 190 |||||||||||||||||||| Sbjct: 2057361 tctttttcggattttcagaa 2057380 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,528,348 Number of Sequences: 3902068 Number of extensions: 2528348 Number of successful extensions: 61368 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61308 Number of HSP's gapped (non-prelim): 60 length of query: 271 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 249 effective length of database: 17,147,199,772 effective search space: 4269652743228 effective search space used: 4269652743228 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)