>ref|NM_000988.3| Homo sapiens ribosomal protein L27 (RPL27), mRNA
          Length = 514

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 145 accagcaaaaaggaaagaagga 166
           ||||||||||||||||||||||
Sbjct: 22  accagcaaaaaggaaagaagga 1

>emb|BX571822.6| Zebrafish DNA sequence from clone DKEY-5M24 in linkage group 25,
             complete sequence
          Length = 163788

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 198   tccaaaaatacttaaaagatgt 219
             ||||||||||||||||||||||
Sbjct: 52429 tccaaaaatacttaaaagatgt 52450

>gb|AC055866.19| Homo sapiens chromosome 17, clone RP11-376M2, complete sequence
          Length = 204746

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 145    accagcaaaaaggaaagaagga 166
              ||||||||||||||||||||||
Sbjct: 182741 accagcaaaaaggaaagaagga 182720

>gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosome 5, complete sequence
          Length = 198336

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 151    aaaaaggaaagaaggagaaag 171
              |||||||||||||||||||||
Sbjct: 129338 aaaaaggaaagaaggagaaag 129318

>emb|AL731557.7| Human DNA sequence from clone RP11-501J20 on chromosome 10 Contains two
             novel genes, the gene for a novel protein (possible
             ortholog of rodent ventral anterior homeobox containing
             gene 1 (VAX1)), a ribosomal protein L12 (RPL12)
             pseudogene, the 5' end of the SLC18A2 gene for member 2
             solute carrier family 18 (vesicular monoamine), a novel
             gene and ten CpG islands, complete sequence
          Length = 142068

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 151   aaaaaggaaagaaggagaaag 171
             |||||||||||||||||||||
Sbjct: 88784 aaaaaggaaagaaggagaaag 88764

>gb|AC022655.8| Homo sapiens, clone RP11-28O3, complete sequence
          Length = 142630

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 87    taaccaactaactggatgcag 107
             |||||||||||||||||||||
Sbjct: 45872 taaccaactaactggatgcag 45852

>gb|AC012485.13| Homo sapiens BAC clone RP11-5O24 from 2, complete sequence
          Length = 168738

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 151    aaaaaggaaagaaggagaaag 171
              |||||||||||||||||||||
Sbjct: 154600 aaaaaggaaagaaggagaaag 154620

>gb|AC005661.1|AC005661 citb_54_o_2, complete sequence
          Length = 84633

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 151   aaaaaggaaagaaggagaaag 171
             |||||||||||||||||||||
Sbjct: 68949 aaaaaggaaagaaggagaaag 68929

>gb|AC102657.13| Mus musculus chromosome 10, clone RP23-15N10, complete sequence
          Length = 186954

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 148   agcaaaaaggaaagaaggagaaagg 172
             |||| ||||||||||||||||||||
Sbjct: 45836 agcagaaaggaaagaaggagaaagg 45860

>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                               
Query: 121    ctgcggcagttatca-gtcaagatcaccagcaa 152
              ||||||||||||||| |||||||||||| ||||
Sbjct: 324532 ctgcggcagttatcaggtcaagatcaccggcaa 324564

>ref|XM_511528.1| PREDICTED: Pan troglodytes similar to ribosomal protein L27
           (LOC454706), mRNA
          Length = 513

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 cagcaaaaaggaaagaagga 166
           ||||||||||||||||||||
Sbjct: 24  cagcaaaaaggaaagaagga 5

>gb|AY448016.1|AY448010S7 Ipomoea trifida haplotype S1 self-incompatibility (S-) locus, contig
             SR7
          Length = 55205

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   aaaaaggaaagaaggagaaa 170
             ||||||||||||||||||||
Sbjct: 46841 aaaaaggaaagaaggagaaa 46822

>gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, complete sequence
          Length = 157092

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   aaaaatacttaaaagatgta 220
             ||||||||||||||||||||
Sbjct: 36239 aaaaatacttaaaagatgta 36220

>gb|AC132402.3| Mus musculus BAC clone RP23-404I24 from chromosome 19, complete sequence
          Length = 217490

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    aaaaaggaaagaaggagaaa 170
              ||||||||||||||||||||
Sbjct: 168312 aaaaaggaaagaaggagaaa 168293

>emb|AL356384.9| Human DNA sequence from clone RP11-436I5 on chromosome 13, complete
             sequence
          Length = 95896

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   aaaggaaagaaggagaaagg 172
             ||||||||||||||||||||
Sbjct: 30045 aaaggaaagaaggagaaagg 30026

>gb|AC122829.4| Mus musculus BAC clone RP23-224F12 from 10, complete sequence
          Length = 155915

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    aaaggaaagaaggagaaagg 172
              ||||||||||||||||||||
Sbjct: 109444 aaaggaaagaaggagaaagg 109425

>gb|AC002432.1| Homo sapiens BAC clone CTA-317G18 from 7, complete sequence
          Length = 143427

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   aaaaggaaagaaggagaaag 171
             ||||||||||||||||||||
Sbjct: 41345 aaaaggaaagaaggagaaag 41364

>emb|AL672040.10| Human DNA sequence from clone RP11-449L4 on chromosome X, complete
             sequence
          Length = 117297

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   aaaaaggaaagaaggagaaa 170
             ||||||||||||||||||||
Sbjct: 92768 aaaaaggaaagaaggagaaa 92787

>emb|AL353764.9| Human DNA sequence from clone RP11-440G5 on chromosome 9 Contains the
              NFIL3 gene for interleukin 3 regulated nuclear factor, a
              novel gene and two CpG islands, complete sequence
          Length = 170898

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    aaaggaaagaaggagaaagg 172
              ||||||||||||||||||||
Sbjct: 151089 aaaggaaagaaggagaaagg 151108

>gb|AC044849.12| Homo sapiens chromosome 8, clone RP11-489E7, complete sequence
          Length = 149301

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   aaaaggaaagaaggagaaag 171
             ||||||||||||||||||||
Sbjct: 17378 aaaaggaaagaaggagaaag 17397

>emb|AL603662.11| Mouse DNA sequence from clone RP23-396M19 on chromosome 11 Contains the
             3' end of the Myh10 gene for non-muscle myosin heavy chain
             10, the Ndel1 gene for nuclear distribution gene E-like
             homolog 1 (A. nidulans), three genes for novel proteins
             (9930039A11Rik, 1810012H11Rik and D130071N09), the Rpl26
             gene for ribosomal protein L26, gene Oppo1-pending (oppo
             1), gene RAN guanine nucleotide release factor
             (Rangnrf-pending) and three CpG islands, complete sequence
          Length = 201275

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   aaacaactccaaaaatactt 210
             ||||||||||||||||||||
Sbjct: 29402 aaacaactccaaaaatactt 29421

>emb|AL591126.18| Mouse DNA sequence from clone RP23-188A3 on chromosome 11 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (Gapd)
             pseudogene, the 5' end of the Nf1 gene for
             neurofibromatosis 1 and a ribosomal protein L17 (Rpl17)
             pseudogene, complete sequence
          Length = 190048

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 154   aaggaaagaaggagaaaggtaaca 177
             |||||| |||||||||||||||||
Sbjct: 67663 aaggaaggaaggagaaaggtaaca 67640

>emb|AJ697623.1| Lachnaea laxa chloroplast partial rps16 gene, partial intron
          Length = 811

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 186 ctctcaaacaactccaaaaatacttaaa 213
           |||||||| | |||||||||||||||||
Sbjct: 602 ctctcaaatagctccaaaaatacttaaa 575

>emb|AJ697615.1| Lachnaea nervosa chloroplast partial rps16 gene, partial intron
          Length = 785

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 186 ctctcaaacaactccaaaaatacttaaa 213
           |||||||| | |||||||||||||||||
Sbjct: 592 ctctcaaatagctccaaaaatacttaaa 565

>dbj|AK124148.1| Homo sapiens cDNA FLJ42154 fis, clone THYMU2003542, moderately
           similar to 60S RIBOSOMAL PROTEIN L27
          Length = 1871

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 cagcaaaaaggaaagaagga 166
           ||||||||||||||||||||
Sbjct: 30  cagcaaaaaggaaagaagga 11

>gb|AC069308.21| Mus musculus Strain C57BL6/J Chromosome 8 RP23-21B7, complete sequence
          Length = 239821

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    aaaggaaagaaggagaaagg 172
              ||||||||||||||||||||
Sbjct: 157026 aaaggaaagaaggagaaagg 157045

>gb|AC091165.15| Homo sapiens chromosome 8, clone RP11-366G13, complete sequence
          Length = 188456

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   aaaaggaaagaaggagaaag 171
             ||||||||||||||||||||
Sbjct: 46327 aaaaggaaagaaggagaaag 46308

>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete
             sequence; splicing factor SF2-like protein (SF2) and
             universal stress protein (USP1) genes and Hv
             receptor-kinase-like pseudogene, complete cds; and
             retrotransposons Sandra6 and Sandra7, complete sequence
          Length = 82293

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   aaaaaggaaagaaggagaaa 170
             ||||||||||||||||||||
Sbjct: 71366 aaaaaggaaagaaggagaaa 71347

>dbj|AB061851.2| Homo sapiens RPL27 gene for ribosomal protein L27, complete cds
          Length = 6171

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 cagcaaaaaggaaagaagga 166
           ||||||||||||||||||||
Sbjct: 398 cagcaaaaaggaaagaagga 379

>gb|AC009964.11| Homo sapiens BAC clone RP11-387G23 from 2, complete sequence
          Length = 197087

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   caaaaaggaaagaaggagaa 169
             ||||||||||||||||||||
Sbjct: 36673 caaaaaggaaagaaggagaa 36654

>gb|AC108697.3| Homo sapiens 3 BAC RP11-8N23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163737

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   cagttaaatctgtcttctgc 124
             ||||||||||||||||||||
Sbjct: 63240 cagttaaatctgtcttctgc 63221

>gb|AC107304.5| Homo sapiens 3 BAC RP11-598F17 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 179532

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  cagttaaatctgtcttctgc 124
            ||||||||||||||||||||
Sbjct: 2474 cagttaaatctgtcttctgc 2493

>gb|AC013265.7| Homo sapiens BAC clone RP11-197H3 from 2, complete sequence
          Length = 151721

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   aaggaaagaaggagaaaggt 173
             ||||||||||||||||||||
Sbjct: 72862 aaggaaagaaggagaaaggt 72881

>gb|AC084208.5| Homo sapiens BAC clone RP11-228P15 from 2, complete sequence
          Length = 141130

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    ttggcgacaccaacagtgga 54
             ||||||||||||||||||||
Sbjct: 81094 ttggcgacaccaacagtgga 81113

>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 227    gacgaaggagacagcgggaaagcagaac 254
              |||||||||||||||| | |||||||||
Sbjct: 597050 gacgaaggagacagcgaggaagcagaac 597077

>emb|CT025539.18| Mouse DNA sequence from clone RP23-221K23 on chromosome 12, complete
              sequence
          Length = 167603

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    aaaggaaagaaggagaaagg 172
              ||||||||||||||||||||
Sbjct: 163633 aaaggaaagaaggagaaagg 163614

>emb|AL121656.2|CNS01DS6 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 367K01 of
              library CITB_978_SKB from chromosome 2 of Homo sapiens
              (Human)
          Length = 179206

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    aaaggaaagaaggagaaagg 172
              ||||||||||||||||||||
Sbjct: 137161 aaaggaaagaaggagaaagg 137142

>gb|AC132247.3| Mus musculus BAC clone RP24-424J1 from 19, complete sequence
          Length = 187078

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  aaaaaggaaagaaggagaaa 170
            ||||||||||||||||||||
Sbjct: 2143 aaaaaggaaagaaggagaaa 2124


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,944,008
Number of Sequences: 3902068
Number of extensions: 2944008
Number of successful extensions: 67513
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 67434
Number of HSP's gapped (non-prelim): 80
length of query: 268
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 246
effective length of database: 17,147,199,772
effective search space: 4218211143912
effective search space used: 4218211143912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)