ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHOSP_NDVB (P24698) Phosphoprotein (Protein P) 30 1.2
2MSA2_PLAFF (P19599) Merozoite surface antigen 2 precursor (MSA-2... 29 3.5
3RNH2_ANASP (Q8YP68) Ribonuclease HII (EC 3.1.26.4) (RNase HII) 28 4.6
4MSA2_PLAFJ (P50499) Merozoite surface antigen 2 precursor (MSA-2) 28 4.6
5RP43_RIFPA (Q9NH13) Exoskeleton protein RP43 precursor 28 6.0
6LBD13_ARATH (Q9AT61) LOB domain protein 13 28 6.0
7MNS1_YEAST (P32906) Endoplasmic reticulum mannosyl-oligosacchari... 28 7.8

>PHOSP_NDVB (P24698) Phosphoprotein (Protein P)|
          Length = 395

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 156 TNPTKMLLLLLPKFSEKSMKAQAGQWSPP 242
           T  +  LLL+L K S KS  A+ G WS P
Sbjct: 111 TGASNSLLLMLDKLSNKSSNAKKGLWSSP 139



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>MSA2_PLAFF (P19599) Merozoite surface antigen 2 precursor (MSA-2) (Merozoite|
           45 kDa surface antigen) (AG513)
          Length = 264

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +2

Query: 35  SSVTVTVTLLDAETTSKHAYATHR*G*RRQCKGCFCQITSNQSNQNATPTSAKILGKEHE 214
           S+ T T    +++TT+  A  T   G +R         T+N  +Q  TPT+A     +  
Sbjct: 73  SASTSTTNNGESQTTTPTAADTIASGSQRSTNSASTSTTNNGESQTTTPTAA-----DTP 127

Query: 215 STGRAVVPSPLIT 253
           +   ++ PSP IT
Sbjct: 128 TATESISPSPPIT 140



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>RNH2_ANASP (Q8YP68) Ribonuclease HII (EC 3.1.26.4) (RNase HII)|
          Length = 225

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 24  KMHYRPSLLLLHY*MLKQQASMLTPRIVKGDDGNVKVASARLPA-TNPTKMLLLLLPKFS 200
           K+  +P L L+      Q   ML   IVKGD+ ++ +A+A + A      ++  L  K+ 
Sbjct: 126 KLKLQPILCLIDGNQPVQDLLMLQQTIVKGDERSLNIAAASIMAKVWRDDLIQRLATKYP 185

Query: 201 EKSMKAQAGQWSPPH 245
              +K+  G  S  H
Sbjct: 186 MYDLKSNKGYGSKKH 200



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>MSA2_PLAFJ (P50499) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 264

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +2

Query: 35  SSVTVTVTLLDAETTSKHAYATHR*G*RRQCKGCFCQITSNQSNQNATPTSAKILGKEHE 214
           S+ T T    +++TT+  A  T   G +R         T+N  +Q  TPT+A     +  
Sbjct: 73  SASTSTTNNGESQTTTPTAADTIASGSQRSTNSASTSTTNNGESQTTTPTAA-----DTP 127

Query: 215 STGRAVVPSPLIT 253
           +T  +  PSP IT
Sbjct: 128 TTTESNSPSPPIT 140



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>RP43_RIFPA (Q9NH13) Exoskeleton protein RP43 precursor|
          Length = 421

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 165 LDWLLVIWQKQPLHCRRH 112
           + ++ V WQ  P+HCR+H
Sbjct: 10  VSFMFVTWQTNPVHCRQH 27



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>LBD13_ARATH (Q9AT61) LOB domain protein 13|
          Length = 268

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
 Frame = +2

Query: 5   D*TYSCQDALSSVTVTVTLLDAETTS------KHAYATHR*G*RRQCKGCFCQITSNQSN 166
           D  Y C  A+S++   +  L +E T+      +H Y                 ITS Q+N
Sbjct: 122 DPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEAT------------TITSLQNN 169

Query: 167 QNATPTSAKILGKEHESTGRAVVPSP 244
            N+T T++ +   +H      ++P P
Sbjct: 170 FNSTTTTSSVSCDQHALASAILLPPP 195



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>MNS1_YEAST (P32906) Endoplasmic reticulum mannosyl-oligosaccharide|
           1,2-alpha-mannosidase (EC 3.2.1.113) (ER
           alpha-1,2-mannosidase) (Man(9)-alpha-mannosidase)
          Length = 549

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 60  Y*MLKQQASMLTPRIVKGDDGNVK 131
           Y M KQ +S L P IV  +DGN+K
Sbjct: 386 YQMYKQSSSGLAPEIVVFNDGNIK 409


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,204,105
Number of Sequences: 219361
Number of extensions: 779453
Number of successful extensions: 1959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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