Clone Name | rbastl12a04 |
---|---|
Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 99.4 bits (246), Expect = 2e-21 Identities = 48/53 (90%), Positives = 48/53 (90%), Gaps = 5/53 (9%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYVLLRPS-----DGDPTDEKMVMEMGIPNSISI 111 VDEWNNDPDRKNRHGAGMVPYVLLRPS DGDPTDEKMVMEMGIPNSISI Sbjct: 884 VDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 80.5 bits (197), Expect = 1e-15 Identities = 36/48 (75%), Positives = 41/48 (85%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 V+EWN D R+NRHGAG+VPYVLLRP +G+P D K VMEMGIPNSISI Sbjct: 885 VEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 47.4 bits (111), Expect = 1e-05 Identities = 26/48 (54%), Positives = 31/48 (64%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 +D NN+P+ KNR GAG+VPY LL+ P E V GIPNSISI Sbjct: 854 IDMRNNNPENKNRCGAGIVPYELLK-----PFSEPGVTGRGIPNSISI 896
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 42.4 bits (98), Expect = 3e-04 Identities = 20/48 (41%), Positives = 30/48 (62%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 ++ N DP R+NR GAG++PY L+ PS G + G+PNS++I Sbjct: 857 IERRNADPSRRNRCGAGVLPYELMAPSSGPG-----ITCRGVPNSVTI 899
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 42.0 bits (97), Expect = 4e-04 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEK--MVMEMGIPNSISI 111 + + N + KNR+G +PY+LL P+ D T EK + MGIPNSISI Sbjct: 828 IKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 111 N+DP+ KNR+G PY+LL P+ D + GIPNSISI Sbjct: 818 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 40.0 bits (92), Expect = 0.002 Identities = 23/45 (51%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGD-PTDEKMVMEMGIPNSISI 111 N DP RKNR G PY LL P+ D D + GIPNSISI Sbjct: 826 NKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 39.7 bits (91), Expect = 0.002 Identities = 24/48 (50%), Positives = 29/48 (60%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 +DE N + KNR GAG+V Y LL+ PT E V MG+P SISI Sbjct: 854 IDERNVNITLKNRAGAGVVKYELLK-----PTSEHGVTGMGVPYSISI 896
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 39.3 bits (90), Expect = 0.003 Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYVLLRP-SDGDPTDEKMVMEMGIPNSISI 111 +D N D KNR GAG++PY L++P SD T MGIPNS SI Sbjct: 899 IDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTG------MGIPNSTSI 941
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 39.3 bits (90), Expect = 0.003 Identities = 23/48 (47%), Positives = 28/48 (58%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 ++ N D RKNR GAG++PY LL PS V G+PNSISI Sbjct: 876 IERRNADHGRKNRCGAGVLPYELLAPS-----SPPGVTCRGVPNSISI 918
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 39.3 bits (90), Expect = 0.003 Identities = 22/48 (45%), Positives = 28/48 (58%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 +D N D KNR GAG++PY L++ P + V MGIPNS SI Sbjct: 882 IDGRNKDRKLKNRCGAGILPYQLMK-----PFSDSGVTGMGIPNSTSI 924
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 38.5 bits (88), Expect = 0.005 Identities = 23/48 (47%), Positives = 27/48 (56%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 +DE N+D KNR G +PY LL PS E V GIPNS+SI Sbjct: 817 IDERNDDETLKNRTGLVKMPYTLLFPS-----SEGGVTGRGIPNSVSI 859
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 38.1 bits (87), Expect = 0.006 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 111 N D KNR+G PY+LL P+ D T + GIPNSISI Sbjct: 822 NGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 37.4 bits (85), Expect = 0.010 Identities = 21/44 (47%), Positives = 26/44 (59%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 NND +NRHG +PY LL PS ++ + GIPNSISI Sbjct: 823 NNDEKLRNRHGPVEMPYTLLYPS-----SKEGLTFRGIPNSISI 861
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 37.0 bits (84), Expect = 0.013 Identities = 21/44 (47%), Positives = 26/44 (59%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 NND +NR+G +PY LL PS E+ + GIPNSISI Sbjct: 828 NNDESLRNRYGPVKMPYTLLYPS-----SEEGLTCRGIPNSISI 866
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 36.6 bits (83), Expect = 0.018 Identities = 21/46 (45%), Positives = 26/46 (56%) Frame = -3 Query: 248 EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 E N D +NR+G +PY LL PS E+ + GIPNSISI Sbjct: 813 EKNKDETLRNRYGPAKMPYTLLYPS-----SEEGLTFRGIPNSISI 853
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 35.0 bits (79), Expect = 0.051 Identities = 21/48 (43%), Positives = 27/48 (56%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 + E NND +NR G +PY LL PS ++ + GIPNSISI Sbjct: 815 LSERNNDEKLRNRCGPVQMPYTLLLPS-----SKEGLTFRGIPNSISI 857
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 34.7 bits (78), Expect = 0.067 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGDPTD-EKMVMEMGIPNSISI 111 N DP KNR G PY L+ P+ D + + GIPNSISI Sbjct: 819 NKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 34.7 bits (78), Expect = 0.067 Identities = 20/44 (45%), Positives = 25/44 (56%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 N+DP +NR G +PY LL S E+ + GIPNSISI Sbjct: 826 NSDPSLRNRTGPVQLPYTLLHRS-----SEEGLTFKGIPNSISI 864
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 34.7 bits (78), Expect = 0.067 Identities = 20/44 (45%), Positives = 25/44 (56%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 NNDP +R G +PY LL PS ++ + GIPNSISI Sbjct: 826 NNDPSLYHRVGPVQLPYTLLHPS-----SKEGLTFRGIPNSISI 864
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 33.9 bits (76), Expect = 0.11 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = -3 Query: 242 NNDPDRK-NRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 NNDP + NR G +PY LL PS E+ + GIPNSISI Sbjct: 800 NNDPSLQGNRLGPVQLPYTLLYPSS-----EEGLTFRGIPNSISI 839
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 33.1 bits (74), Expect = 0.19 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 N+ KNR G VPY LL P T E+ + GIPNS+SI Sbjct: 821 NSHKSWKNRSGPVNVPYTLLFP-----TSEEGLTGKGIPNSVSI 859
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 33.1 bits (74), Expect = 0.19 Identities = 20/44 (45%), Positives = 22/44 (50%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 NND NR G +PY LL P+ T GIPNSISI Sbjct: 828 NNDQSLSNRLGPVQLPYTLLHPNSEGLTCR------GIPNSISI 865
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 32.0 bits (71), Expect = 0.43 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 N D +NR+G +PY +L P+ +++ + GIPNSISI Sbjct: 823 NKDSSLRNRNGPVKMPYTVLLPT----CEDEGLTFRGIPNSISI 862
>UREE_RHOS4 (Q3J156) Urease accessory protein ureE| Length = 182 Score = 30.0 bits (66), Expect = 1.6 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = -2 Query: 234 PRPEKPTRRRHGAVCAAQAVGR*SHGREDGDGDGHPQQHLHLS 106 PR E P R GA + +G HG G G HP H+H+S Sbjct: 128 PRTE-PFRPEGGAYGHGRTLGH-DHGPAQGHGHDHPHVHVHIS 168
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 29.3 bits (64), Expect = 2.8 Identities = 19/44 (43%), Positives = 21/44 (47%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 111 N D NR G PY LL P T E + GIPNS+SI Sbjct: 823 NGDNILTNRSGPVNAPYTLLFP-----TSEGGLTGKGIPNSVSI 861
>ASPA_PROMM (Q7V5L6) Probable aspartoacylase (EC 3.5.1.15)| Length = 304 Score = 28.9 bits (63), Expect = 3.6 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = -3 Query: 254 VDEWNNDPDRKNRHGAGMVPYV 189 +D+W+ P+ N HG G+VP + Sbjct: 23 LDQWSQTPELINTHGVGVVPVI 44
>Y463_CHRVO (Q7P0V2) UPF0341 protein CV_0463| Length = 258 Score = 28.5 bits (62), Expect = 4.8 Identities = 16/35 (45%), Positives = 17/35 (48%) Frame = -2 Query: 231 RPEKPTRRRHGAVCAAQAVGR*SHGREDGDGDGHP 127 R E T +HGAV A G H RE G G G P Sbjct: 45 RLELLTTGKHGAVYAEFVEGAARHRREQGGGRGQP 79
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 28.1 bits (61), Expect = 6.2 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 242 NNDPDRKNRHGAGMVPYVLLRPS 174 NND +NR G +PY LL PS Sbjct: 709 NNDETLRNRTGPAKMPYTLLYPS 731 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,867,810 Number of Sequences: 219361 Number of extensions: 755155 Number of successful extensions: 2222 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2199 length of database: 80,573,946 effective HSP length: 60 effective length of database: 67,412,286 effective search space used: 1617894864 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)