ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX015981.1|CNS08KHT Single read from an extremity of a full-... 44 0.25
2ref|XM_747822.1| Aspergillus fumigatus Af293 C6 transcription fa... 40 3.9
3ref|XM_947841.1| Theileria annulata strain Ankara DEAD-box famil... 40 3.9
4gb|AC096533.3| Homo sapiens chromosome 1 clone RP11-6B6, complet... 40 3.9
5emb|CR759840.6| Zebrafish DNA sequence from clone DKEY-239O7 in ... 40 3.9
6emb|AL929309.6| Zebrafish DNA sequence from clone CH211-51L3 in ... 40 3.9

>emb|BX015981.1|CNS08KHT Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA24AA05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 567

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 92  atatgcccaaagagatacactaccagttcg 121
           ||||||||||||| |||||| |||||||||
Sbjct: 219 atatgcccaaagacatacacgaccagttcg 190



to top

>ref|XM_747822.1| Aspergillus fumigatus Af293 C6 transcription factor UaY (Afu1g15470)
            partial mRNA
          Length = 3267

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  gacaagcttctgctggggga 269
            ||||||||||||||||||||
Sbjct: 2437 gacaagcttctgctggggga 2418



to top

>ref|XM_947841.1| Theileria annulata strain Ankara DEAD-box family helicase (TA07525)
            partial mRNA
          Length = 2274

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 87   ctatgatatgcccaaagagataca 110
            |||||||||||||||||| |||||
Sbjct: 2046 ctatgatatgcccaaagacataca 2069



to top

>gb|AC096533.3| Homo sapiens chromosome 1 clone RP11-6B6, complete sequence
          Length = 163339

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    tggagcaaagaattctggct 75
             ||||||||||||||||||||
Sbjct: 98840 tggagcaaagaattctggct 98859



to top

>emb|CR759840.6| Zebrafish DNA sequence from clone DKEY-239O7 in linkage group 25,
             complete sequence
          Length = 110071

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    gggttgtcctgctgctaataatgt 50
             ||||||| ||||||||||||||||
Sbjct: 56225 gggttgttctgctgctaataatgt 56248



to top

>emb|AL929309.6| Zebrafish DNA sequence from clone CH211-51L3 in linkage group 25,
             complete sequence
          Length = 191745

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    gggttgtcctgctgctaataatgt 50
             ||||||| ||||||||||||||||
Sbjct: 80560 gggttgttctgctgctaataatgt 80583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,628,865
Number of Sequences: 3902068
Number of extensions: 2628865
Number of successful extensions: 42775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42769
Number of HSP's gapped (non-prelim): 6
length of query: 300
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 278
effective length of database: 17,147,199,772
effective search space: 4766921536616
effective search space used: 4766921536616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top