Clone Name | rbastl12a01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC105389.3| Homo sapiens BAC clone RP11-227F19 from 4, complete sequence Length = 187067 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 aacaaaagattaacacaaaca 112 ||||||||||||||||||||| Sbjct: 62901 aacaaaagattaacacaaaca 62921
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 cagtttattcaaagatcatta 68 ||||||||||||||||||||| Sbjct: 5119783 cagtttattcaaagatcatta 5119763
>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0453H10 Length = 133464 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 cagtttattcaaagatcatta 68 ||||||||||||||||||||| Sbjct: 80281 cagtttattcaaagatcatta 80261
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03 Length = 170173 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 cagtttattcaaagatcatta 68 ||||||||||||||||||||| Sbjct: 13236 cagtttattcaaagatcatta 13216
>emb|AL032822.1|HS59B16 Human DNA sequence from clone RP1-59B16 on chromosome 6p22.1-22.3 Contains an exonuclease FLJ12671 pseudogene, complete sequence Length = 99902 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tagcagcctatgtaacatggcagt 149 ||||||||| |||||||||||||| Sbjct: 83454 tagcagcctttgtaacatggcagt 83477
>emb|Z49705.1|SC8520X S.cerevisiae chromosome XIII cosmid 8520 Length = 41200 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aattcagtttattcaaagat 63 |||||||||||||||||||| Sbjct: 18107 aattcagtttattcaaagat 18088
>emb|AL669849.19| Mouse DNA sequence from clone RP23-341O22 on chromosome 11 Contains part of the Dock2 gene for dedicator of cyto-kinesis 2, complete sequence Length = 148320 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 aacaatgagccctagcagcctatg 137 |||||||||| ||||||||||||| Sbjct: 107173 aacaatgagctctagcagcctatg 107196
>emb|BX950174.16| Zebrafish DNA sequence from clone DKEY-219G5 in linkage group 6, complete sequence Length = 170278 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 gaaacagacagagtggctgc 309 |||||||||||||||||||| Sbjct: 164736 gaaacagacagagtggctgc 164755
>gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG098 cyclic nucleotide-gated ion channel 4 (Nec1) gene, complete cds Length = 9090 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 catggcagtattccacagag 160 |||||||||||||||||||| Sbjct: 4410 catggcagtattccacagag 4391
>emb|BX005150.5| Zebrafish DNA sequence from clone CH211-105J21 in linkage group 6, complete sequence Length = 167946 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 gaaacagacagagtggctgc 309 |||||||||||||||||||| Sbjct: 12400 gaaacagacagagtggctgc 12381
>gb|AC171177.2| Gallus gallus BAC clone CH261-178G24 from chromosome ul, complete sequence Length = 203278 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tttcaaaggtcaacaaaaga 100 |||||||||||||||||||| Sbjct: 13909 tttcaaaggtcaacaaaaga 13928
>emb|CT030192.6| M.truncatula DNA sequence from clone MTH2-16D16 on chromosome 3, complete sequence Length = 112216 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gatgaaaatccaaacttgca 191 |||||||||||||||||||| Sbjct: 38680 gatgaaaatccaaacttgca 38661
>emb|AL805901.6| Mouse DNA sequence from clone RP23-24K4 on chromosome X, complete sequence Length = 243012 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 attatagatacttgactttcaaag 88 |||||||||||||||| ||||||| Sbjct: 207783 attatagatacttgaccttcaaag 207806 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,520,492 Number of Sequences: 3902068 Number of extensions: 3520492 Number of successful extensions: 63306 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63276 Number of HSP's gapped (non-prelim): 30 length of query: 386 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 364 effective length of database: 17,147,199,772 effective search space: 6241580717008 effective search space used: 6241580717008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)