ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11h11 |
|---|---|
| Clone Library Name | barley_pub |
>UVH1_ARATH (Q9LKI5) DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet| hypersensitive 1) (AtRAD1) (DNA excision repair protein XP-F homolog) Length = 956 Score = 52.8 bits (125), Expect = 2e-07 Identities = 26/38 (68%), Positives = 32/38 (84%) Frame = -2 Query: 351 SLAELALLPVERLAELMGSQKGARTLKEFLDAKCPSMI 238 SLAELA LPVE LAELMG K A++L+EFLDAK P+++ Sbjct: 919 SLAELASLPVETLAELMGGHKVAKSLREFLDAKYPTLL 956
>POLO_DROME (P52304) Serine/threonine-protein kinase polo (EC 2.7.11.21)| Length = 576 Score = 32.3 bits (72), Expect = 0.30 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +2 Query: 44 GIGFGWNSTTQLTVLLTQCDIDYTSK*PSPTYLTSTAY 157 GIG +N TT+L +L Q ++ + K TY+T+T Y Sbjct: 412 GIGVMFNDTTKLILLPNQINVHFIDKDGKETYMTTTDY 449
>ERCC4_MOUSE (Q9QZD4) DNA repair endonuclease XPF (EC 3.1.-.-) (DNA excision| repair protein ERCC-4) Length = 906 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -2 Query: 351 SLAELALLPVERLAELMGSQKGARTLKEFLDAKCPSMIS 235 ++AELA L +ERL ++G A+ L +FL ++S Sbjct: 862 NIAELATLSLERLTTILGHSGNAKQLHDFLHTAYADLVS 900
>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)| Length = 623 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = -1 Query: 343 GARAATGREASGADGQPEGCPHAQGVSGCQ 254 G R GR S P GCP QG+ G + Sbjct: 44 GHRGPPGRPGSPGSSGPPGCPGGQGIPGLE 73
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = -1 Query: 349 PGGARAATGREASGADGQPEGCPHAQGVS 263 PG A A TG G G P G P A+G S Sbjct: 3877 PGPAGAKTGARPGGTPGAPAGQPAAEGES 3905
>POLG_PYFV1 (Q05057) Genome polyprotein [Contains: Putative leader protein;| Coat protein 1 (22.5 kDa protein) (CP-1); Coat protein 2 (26 kDa protein) (CP-2); Coat protein 3 (31 kDa protein) (CP-3); Putative helicase (EC 3.6.1.-) (Putative NTP-binding prot Length = 3027 Score = 28.5 bits (62), Expect = 4.3 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = +3 Query: 36 TYLALDLDGIQLPN*QSSLHNVISITLANSLALLT*QVQRI*TPIVQRNSSSKTSLHLTR 215 T A D DGI++P S+H +S +NS L+ R+ TP+ + SS L+ Sbjct: 505 TVFAKDSDGIKIPIEFMSIHKAVSAHDSNSHNALSRVEARVVTPLSHISLSSPV---LSI 561 Query: 216 TVEVDA 233 T++V A Sbjct: 562 TIQVFA 567
>GLNE_YERPS (Q665V2) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 951 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = -2 Query: 351 SLAELALLPVERLAELMGSQKGARTLKEFLDA 256 ++AEL LLP +++A+L GS R L+ L A Sbjct: 355 AVAELGLLPEQQVADLSGSYLFLRRLENLLQA 386
>GLNE_YERPE (Q8ZI61) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 951 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = -2 Query: 351 SLAELALLPVERLAELMGSQKGARTLKEFLDA 256 ++AEL LLP +++A+L GS R L+ L A Sbjct: 355 AVAELGLLPEQQVADLSGSYLFLRRLENLLQA 386
>ERCC4_CRIGR (Q9QYM7) DNA repair endonuclease XPF (EC 3.1.-.-) (DNA excision| repair protein ERCC-4) Length = 902 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -2 Query: 351 SLAELALLPVERLAELMGSQKGARTLKEFLDAKCPSMIS 235 ++AELA L ERL ++G A+ L +FL ++S Sbjct: 858 NIAELASLSQERLTSILGHAGNAKQLYDFLHTAYADVVS 896
>VAV_DROME (Q9NHV9) Protein vav (DroVav)| Length = 793 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +2 Query: 149 TAYLNTHSSEELLFQDLTSLDQNSRS 226 T Y +T++ EE ++QDL +L + SRS Sbjct: 181 TGYDHTNTKEEEVYQDLCALHRTSRS 206
>PURL_RHIME (Q92PH7) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 743 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = +3 Query: 165 PIVQRNSSSKTSLHLTRTVEVDAMRSCWDTWHP 263 P++ R + L R V VD +RS + W P Sbjct: 700 PVIGRTGGNAVQLGDARPVSVDELRSAHEAWFP 732
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = -1 Query: 349 PGGARAATGREASGADGQPEGCPHAQGVSGCQ 254 P GA A G + + D G P +QG G Q Sbjct: 696 PRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQ 727
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = -1 Query: 349 PGGARAATGREASGADGQPEGCPHAQGVSGCQ 254 P GA A G + + D G P +QG G Q Sbjct: 692 PRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQ 723
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = -1 Query: 349 PGGARAATGREASGADGQPEGCPHAQGVSGCQ 254 P GA A G + + D G P +QG G Q Sbjct: 261 PRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQ 292 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,925,081 Number of Sequences: 219361 Number of extensions: 709148 Number of successful extensions: 1771 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1649 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1771 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
