ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11h10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 47.4 bits (111), Expect = 9e-06 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -2 Query: 316 LLYPNTSDANGEKALGLTAMGIPNSVSI 233 LLYPNTSD EK GLTAMGIPNS+SI Sbjct: 850 LLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 40.4 bits (93), Expect = 0.001 Identities = 20/28 (71%), Positives = 22/28 (78%) Frame = -2 Query: 316 LLYPNTSDANGEKALGLTAMGIPNSVSI 233 LLYPNTSD G A G+TA GIPNS+SI Sbjct: 840 LLYPNTSDVTGAAA-GITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 40.4 bits (93), Expect = 0.001 Identities = 20/28 (71%), Positives = 23/28 (82%) Frame = -2 Query: 316 LLYPNTSDANGEKALGLTAMGIPNSVSI 233 LLYPNTSD G+ A GL+A GIPNS+SI Sbjct: 844 LLYPNTSDLKGDAA-GLSARGIPNSISI 870
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 40.4 bits (93), Expect = 0.001 Identities = 21/28 (75%), Positives = 22/28 (78%) Frame = -2 Query: 316 LLYPNTSDANGEKALGLTAMGIPNSVSI 233 LLYPNTSD G A GLTA GIPNS+SI Sbjct: 836 LLYPNTSDHKGAAA-GLTAKGIPNSISI 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 36.6 bits (83), Expect = 0.016 Identities = 18/28 (64%), Positives = 22/28 (78%) Frame = -2 Query: 316 LLYPNTSDANGEKALGLTAMGIPNSVSI 233 L++PNTSD G A G+TA GIPNS+SI Sbjct: 837 LMFPNTSDNKGA-AEGITARGIPNSISI 863
>ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (MXBP protein) Length = 487 Score = 31.6 bits (70), Expect = 0.52 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Frame = +3 Query: 36 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 185 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 186 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSPLASDVLG 308 G T+ + RP S Q SP+ +P + G Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQNTSG 323
>ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (HB16) Length = 487 Score = 31.2 bits (69), Expect = 0.69 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Frame = +3 Query: 36 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 185 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 186 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSPLASDVLG 308 G T+ + RP S Q SP+ +P G Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSG 323
>ATF2_CHICK (O93602) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) Length = 487 Score = 31.2 bits (69), Expect = 0.69 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%) Frame = +3 Query: 36 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*KV----------TQYTLRDTNRSMTS 185 H P + ++ ++ P IPG PQP +S+ K+ Q T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSIPGIPGPSSPQPVQSEAKLRLKAALTQQHPQVTNGDTAKGHPS 282 Query: 186 GRTTTERRKQRPCSAQMETLLGMPMAVSPS 275 G T+ + RP S Q SP+ Sbjct: 283 GLVRTQSEEPRPQSLQQPATSTTETPASPA 312
>GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 449 Score = 30.8 bits (68), Expect = 0.89 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +2 Query: 38 LSSPYQHHLRHNHHFPSSTNPW---QLITATTQKPMKSNTIH 154 L+ Y HH H+HH PS +P+ L A P ++ +H Sbjct: 173 LNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLH 214
>ATF2_RAT (Q00969) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) Length = 487 Score = 29.6 bits (65), Expect = 2.0 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Frame = +3 Query: 36 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 185 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 186 GRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSPLASDVLG 308 G + + RP S Q SP+ +P + G Sbjct: 283 GLVRAQSEESRPQSLQQPATSTTETPASPAHTTPQTQNTSG 323
>HXA1_MOUSE (P09022) Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein| ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399) Length = 331 Score = 29.3 bits (64), Expect = 2.6 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +2 Query: 38 LSSPYQHHLRHNHHFPSS 91 +SSP+ HH H+HH P + Sbjct: 56 ISSPHHHHHHHHHHHPQT 73
>C18AA_PAEPP (Q45358) Parasporal crystal protein cry18Aa (Parasporal| delta-endotoxin CryXVIIIA(a)) (Crystaline parasporal protoxin) (79 kDa crystal protein) Length = 706 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 131 PMKSNTIHLARHEPIHDQRTDDYRKKETKTM 223 P+ +NTI PI+ RTD +RKK T+ + Sbjct: 74 PIDNNTICSTDFTPINVMRTDPFRKKSTQEL 104
>DDLA_SHIFL (P0A6K0) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 141 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 275 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECOLI (P0A6J8) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 141 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 275 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECOL6 (Q8FKE3) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 141 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 275 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECO57 (P0A6J9) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 141 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 275 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>AHC1_YEAST (Q12433) Protein AHC1 (ADA HAT complex component 1)| Length = 566 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 8/44 (18%) Frame = +2 Query: 38 LSSPYQHHLRHNHHFPSS--------TNPWQLITATTQKPMKSN 145 + SP Q L+H HH P+S TN +Q+ T + + +++N Sbjct: 1 MMSPAQDKLQHQHHNPNSSSSSSSKMTNVYQVTTPKSPQDLENN 44
>VGLM_EBV (P03215) Glycoprotein M| Length = 405 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +3 Query: 111 LPQPPRSQ*KVTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPM 260 L PR + T R+ RS TS ++ R+QRP S Q +PM Sbjct: 346 LESEPRPRPSRTPSPGRNRRRSSTSSSSSRSTRRQRPVSTQALVSSVLPM 395
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/38 (28%), Positives = 17/38 (44%) Frame = +2 Query: 29 HASLSSPYQHHLRHNHHFPSSTNPWQLITATTQKPMKS 142 H + P+ HH H+HH P P + A + K+ Sbjct: 38 HHNSHHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>HIPK4_RAT (Q4V793) Homeodomain-interacting protein kinase 4 (EC 2.7.11.1)| Length = 616 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 23 LIHASLSSPYQHHLRHNHHFPSSTNPWQL 109 L+HA+ + HH + P +TNPWQL Sbjct: 238 LLHAARKA---HHFFKRNPHPDATNPWQL 263
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/38 (28%), Positives = 17/38 (44%) Frame = +2 Query: 29 HASLSSPYQHHLRHNHHFPSSTNPWQLITATTQKPMKS 142 H + P+ HH H+HH P P + A + K+ Sbjct: 38 HHNSHHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -2 Query: 316 LLYPNTSDANGEKALGLTAMGIPNSVSI 233 LLYP++ + GLT GIPNS+SI Sbjct: 846 LLYPSSEE-------GLTCRGIPNSISI 866
>GDS1_YEAST (P41913) Protein GDS1| Length = 522 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +3 Query: 138 KVTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSPLAS 296 K Y DTN SMT + T + + +Q ++L P S ++ S AS Sbjct: 325 KKRNYMDEDTNESMTEPKKTKTTKPGKQTKSQSLSVLSTPKKGSSASLSTFAS 377
>YO25_CAEEL (P34675) Hypothetical protein ZK688.5| Length = 1620 Score = 27.7 bits (60), Expect = 7.6 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = +3 Query: 90 PLIPGN*LPQPPRSQ*KVTQYTLRDTNRSMTSGRTTTERRKQRPCS--AQMETLLGMPMA 263 P +P LP P Q + TS R TT R +P + A+ ETL P+A Sbjct: 628 PSVPVETLPPPGSDQ------------QPGTSRRFTTHRFNVQPDARGAETETLAPFPVA 675 Query: 264 VSPSAFSPLASDV 302 + P+ +A ++ Sbjct: 676 IEPNELQRIAKNI 688
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 24.6 bits (52), Expect(2) = 8.6 Identities = 10/36 (27%), Positives = 19/36 (52%) Frame = +2 Query: 17 RVLIHASLSSPYQHHLRHNHHFPSSTNPWQLITATT 124 R+ + ++ ++ HH +H+HH P + T TT Sbjct: 10 RLSLPSTTTTRDHHHQQHHHHPPPPPSRTHFTTITT 45 Score = 21.2 bits (43), Expect(2) = 8.6 Identities = 11/41 (26%), Positives = 16/41 (39%) Frame = +1 Query: 100 LATNYRNHPEANEK*HNTPCETRTDP*PADGRLPKEGNKDH 222 L ++ HP + H+ P R P D P +DH Sbjct: 65 LFLSFPPHPPRPPQDHHRPTPARDHRDPRDHLPPTRTRRDH 105
>GLTL2_MOUSE (Q9D2N8) Polypeptide N-acetylgalactosaminyltransferase-like protein| 2 (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase-like protein 2) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 2) (Polypeptide GalNAc tra Length = 638 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -2 Query: 211 FLLSVVVRPLVMDRF-VSRKVYCVTFHWLL 125 F LS V +P +R + R++ C TFHW L Sbjct: 459 FTLSKVAKPDCTERLKLQRRLGCRTFHWFL 488
>SORL_CHICK (Q98930) Sortilin-related receptor (Sorting protein-related| receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding repeats) ( Length = 1592 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Frame = +2 Query: 137 KSNTIHLARHEPIHD----QRTDDYRKKETKTMLSSDGD 241 K NT+++ RHEP + TD ++ +E K ++ D D Sbjct: 167 KPNTVYIERHEPSGTSTVIRSTDFFQSRENKEVILEDVD 205 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,970,509 Number of Sequences: 219361 Number of extensions: 739214 Number of successful extensions: 2519 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2293 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2476 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
