ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 200 1e-48
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 50 0.003
3gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.043
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.043
5emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.67
6emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.67
7ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 2.6

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  200 bits (101), Expect = 1e-48
 Identities = 126/134 (94%), Gaps = 4/134 (2%)
 Strand = Plus / Minus

                                                                        
Query: 80   ttcattattgggcaaaacaagggattttttctgcacacaacaatgcattgaccggtagcc 139
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 140  agctgagctgagcttccgcatgccgatcaaacccgtcgtgcacccaccc----ttattgc 195
            ||||||||||||||||||||||||||||| ||||||||||||| |||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                          
Query: 196  cttaattattcatg 209
            ||||||||||||||
Sbjct: 2776 cttaattattcatg 2763



to top

>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 73   catcgacttcattattgggcaaaacaagggattttttctgcacac 117
            ||||||||| |||||||||||||  |||||| |||||||| ||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacac 1055



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 155  ccgcatgccgatcaaacccgtcgtgcacccac-ccttattgcctta 199
            |||||||||||||  ||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000



to top

>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 187    ccttattgccttaattattcatg 209
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.043
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 187   ccttattgccttaattattcatg 209
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 187      ccttattgccttaattattcatg 209
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.043
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 187      ccttattgccttaattattcatg 209
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060



to top

>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 94    aaacaagggattttttctgca 114
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



to top

>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    gcaaaacaagggattttttct 111
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



to top

>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   ggagggaacatcacaccatc 76
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,469,424
Number of Sequences: 3902068
Number of extensions: 1469424
Number of successful extensions: 135397
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135344
Number of HSP's gapped (non-prelim): 52
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top