ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CEMA_CHLRE (Q37050) Chloroplast envelope membrane protein 30 2.1
2Y1411_SYNY3 (P72725) UPF0272 protein slr1411 29 2.7
3ODP1_BUCAI (P57301) Pyruvate dehydrogenase E1 component (EC 1.2.... 29 2.7
4PDC2_CANAL (O60035) Protein PDC2 28 6.0
5HOXV_RALEU (P31914) Hydrogenase expression/formation protein hoxV 28 6.0
6SGCG_HUMAN (Q13326) Gamma-sarcoglycan (Gamma-SG) (35 kDa dystrop... 28 7.9

>CEMA_CHLRE (Q37050) Chloroplast envelope membrane protein|
          Length = 500

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 181 HSISQVLLFSCWQLNLYTLLYVLVA*EIQV 270
           HSI  +  F    L+L+TLLY+L+  EIQ+
Sbjct: 373 HSIEAITNFFADLLSLFTLLYLLITLEIQI 402



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>Y1411_SYNY3 (P72725) UPF0272 protein slr1411|
          Length = 422

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +2

Query: 26  NMSH--ELIYRAVTSLGTLDKRKNIAAQMKHVYTV----GPIHVRKNYGVLVGKK 172
           N +H   L++R  TSLG   +++   A  +   TV    GPI ++  YG   GKK
Sbjct: 323 NQNHCLNLLFRETTSLGVRVRQQQRYALEREWQTVVIPHGPIRIKVAYGYQAGKK 377



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>ODP1_BUCAI (P57301) Pyruvate dehydrogenase E1 component (EC 1.2.4.1)|
          Length = 887

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 65  LGTLDKRKNIAAQMKHVYTVGPIHVRKNYGVLVGKKE 175
           +G + + KNIA Q+K +   G IH+R  + + V   E
Sbjct: 397 MGVIAEGKNIAHQIKKININGIIHIRDRFNIPVSNDE 433



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>PDC2_CANAL (O60035) Protein PDC2|
          Length = 836

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 148 LRCVGWKKRTMHSISQVLLFSCW-QLNLYTLL 240
           +R + W  R+ HS+S   +FS W + +L+ LL
Sbjct: 428 IRAIEWITRSWHSVSSERIFSSWKKTHLFNLL 459



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>HOXV_RALEU (P31914) Hydrogenase expression/formation protein hoxV|
          Length = 383

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 92  IAAQMKHVYTVGPIHVRKNYGVLVGKKEQCIPLARSFCSPVGN 220
           +A  + H+       VR++ G+LV   + C+P    F   +G+
Sbjct: 337 VAHMLAHLAPFDAADVRRSIGILVAAYDPCVPYTVEFAESLGD 379



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>SGCG_HUMAN (Q13326) Gamma-sarcoglycan (Gamma-SG) (35 kDa dystrophin-associated|
           glycoprotein) (35DAG)
          Length = 290

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 82  KKEYCCSNEA-CLHRGPNSCTEKLRCVGWKKRTMHSISQVLLFSCWQLNLYTLLYVL 249
           +++Y  + E  C+ R  N    K+   GW+KR ++ +  +LL     +NL   +++L
Sbjct: 2   REQYTTATEGICIERPENQYVYKIGIYGWRKRCLY-LFVLLLLIILVVNLALTIWIL 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,368,381
Number of Sequences: 219361
Number of extensions: 738206
Number of successful extensions: 2357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2357
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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