>MNB1A_MAIZE (P38564) Dof zinc finger protein MNB1A|
          Length = 238

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +1

Query: 55  DTIYC--NRQNTPKPQYIVTNCVRTEKK**HWRRH---KNIPFDRGRKKKPCSFPGSSKS 219
           DT +C  N  NT +P++    C R      +W +    +N+P   G +KKP S   SS  
Sbjct: 56  DTKFCYYNNYNTSQPRHFCKGCRR------YWTKGGTLRNVPVGGGTRKKPSSSSSSSSY 109

Query: 220 *AA 228
            AA
Sbjct: 110 VAA 112

>CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3|
          Length = 1396

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 121  FLHNL*QCTVVLEYSVGYNISCQHCRSRKLN 29
            ++ NL  C   LEY  GY ++  H   RKLN
Sbjct: 1319 YMRNLSNCVPTLEYFTGYKMAELHILVRKLN 1349

>TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 438

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 9   ISQNNLRFSFRLLQC*HDIL*PTEYSKTTVHCYKLCKN 122
           + +NNL F+FR +   H +   +E  K + HC K+C N
Sbjct: 34  LKKNNLNFTFRAIHINHQLHPDSE--KWSDHCKKICIN 69

>DOF1A_ARATH (Q9SEZ3) Dof zinc finger protein DOF1.10 (AtDOF1.10) (H-protein|
           promoter-binding factor 2b)
          Length = 399

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +1

Query: 40  DSYNADTIYCNRQNTPKPQYIVTNCVRTEKK**HWR---RHKNIPFDRGRKK 186
           +S N    Y N  N  +P+Y   NC R      +W      +N+P   GR+K
Sbjct: 138 ESANTKFCYYNNYNVNQPRYFCRNCQR------YWTAGGSMRNVPVGSGRRK 183

>PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -2

Query: 301 LRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFFLCQMGCFCVSSNVIISFQ 122
           L+ ++S DY +   KKPW+     + P  C S+ ++   ++     G  C +S + +S  
Sbjct: 419 LKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL---NGIECAASAMEMSAI 472

Query: 121 FLHN 110
             HN
Sbjct: 473 AAHN 476

>PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -2

Query: 301 LRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFFLCQMGCFCVSSNVIISFQ 122
           L+ ++S DY +   KKPW+     + P  C S+ ++   ++     G  C +S + +S  
Sbjct: 419 LKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL---NGIECAASAMEMSAI 472

Query: 121 FLHN 110
             HN
Sbjct: 473 AAHN 476

>PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.5) (PCL1)|
          Length = 505

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -2

Query: 301 LRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFFLCQMGCFCVSSNVIISFQ 122
           L+ ++S DY +   KKPW+     + P  C S+ ++   ++     G  C +S + +S  
Sbjct: 419 LKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL---NGIECAASAMEMSAI 472

Query: 121 FLHN 110
             HN
Sbjct: 473 AAHN 476

>CREA_EMENI (Q01981) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 416

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +1

Query: 73  RQNTPKPQYIVTNCVRTEKK**HWRRHKNIPFDRGRKKKPCSFPGSSK 216
           RQ+ P+P Y    C R   +  H  RH  I    G K   C FPG SK
Sbjct: 57  RQDLPRP-YKCPLCERAFHRLEHQTRH--IRTHTGEKPHACQFPGCSK 101

>NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate transporter 2|
           (Na(+)/dicarboxylate cotransporter 2) (NaDC-2) (ceNaDC2)
          Length = 551

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 171 VKWDVFVSPPMLLFLFSSYTI 109
           ++W VF  PPM ++L +SY I
Sbjct: 241 LQWMVFAIPPMFVYLLASYII 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,991,950
Number of Sequences: 219361
Number of extensions: 855787
Number of successful extensions: 2311
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2307
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)