ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 309 3e-81
2gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 303 2e-79
3emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 100 5e-18
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 5e-18
5dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 5e-18
6dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 5e-18
7emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 100 5e-18
8emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 i... 44 0.26
9emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5... 44 0.26
10gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence 42 1.0
11emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 ... 42 1.0
12emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chr... 42 1.0
13gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, compl... 42 1.0
14gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N... 42 1.0
15gb|AY110434.1| Zea mays CL533_2 mRNA sequence 42 1.0
16emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for pu... 42 1.0
17gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosom... 40 4.0
18gb|AC186150.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 4.0
19gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, com... 40 4.0
20gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome... 40 4.0
21gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, c... 40 4.0
22gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome... 40 4.0
23gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's ... 40 4.0
24emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on ch... 40 4.0
25emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chr... 40 4.0
26gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's... 40 4.0
27emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chr... 40 4.0
28emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo... 40 4.0
29emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in... 40 4.0
30emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in... 40 4.0
31emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 ... 40 4.0
32gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, comp... 40 4.0
33gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, co... 40 4.0
34gb|AC093302.2| Homo sapiens chromosome 5 clone RP11-60A8, comple... 40 4.0
35dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 4.0
36gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, c... 40 4.0
37gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, ... 40 4.0
38dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 40 4.0
39emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chro... 40 4.0
40emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, ... 40 4.0
41emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in ... 40 4.0
42emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in ... 40 4.0
43emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 i... 40 4.0
44emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in ... 40 4.0
45emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic tr... 40 4.0
46emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-9... 40 4.0
47gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete... 40 4.0
48emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in... 40 4.0
49gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, compl... 40 4.0
50emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from... 40 4.0 
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
            sequence
          Length = 2863

 Score =  309 bits (156), Expect = 3e-81
 Identities = 159/160 (99%)
 Strand = Plus / Minus

                                                                        
Query: 11   aagccaaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgta 70
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 aagccaaaatgatcttagattcagttttcgactcctacaatgctgacacgatatattgta 2804

                                                                        
Query: 71   accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 2744

                                                    
Query: 131  aataataacattggaggagacacaaaaacatcccatttga 170
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aataataacattggaggagacacaaaaacatcccatttga 2704



 Score =  163 bits (82), Expect = 4e-37
 Identities = 111/118 (94%), Gaps = 2/118 (1%)
 Strand = Plus / Minus

                                                                        
Query: 189  gccttgttcattcccaggctccagcaagagttaggccgccgtcgcc-gagagactaaaat 247
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||
Sbjct: 2693 gccttgttcattcccaggctccagcaagagttaggccgccgtcgccagagagac-caaat 2635

                                                                      
Query: 248  ccatggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaat 305
            |||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 2634 ccatggcttctttctgtcctcgaaacaataatcaacactcatgtgacctcgcaaaaat 2577
to top
>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA,
            complete cds
          Length = 2887

 Score =  303 bits (153), Expect = 2e-79
 Identities = 153/153 (100%)
 Strand = Plus / Minus

                                                                        
Query: 16   aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 2803

                                                                        
Query: 76   cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 2743

                                             
Query: 136  taacattggaggagacacaaaaacatcccattt 168
            |||||||||||||||||||||||||||||||||
Sbjct: 2742 taacattggaggagacacaaaaacatcccattt 2710



 Score =  200 bits (101), Expect = 2e-48
 Identities = 113/117 (96%)
 Strand = Plus / Minus

                                                                        
Query: 189  gccttgttcattcccaggctccagcaagagttaggccgccgtcgccgagagactaaaatc 248
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 2696 gccttgttcattcccaggctccagcgagagttaggccgccgtcgccgagagaccaaaatc 2637

                                                                     
Query: 249  catggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaat 305
            |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 2636 catggcttcttcctttcctcgaaacaataatcaacactcatgtgacctcgcaaaaat 2580
to top
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 54    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 112
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 42105 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 42164

                                       
Query: 113   gtgtaagaactgaaaagaaataataa 138
             ||||| | || |||||||| ||||||
Sbjct: 42165 gtgtacgcacagaaaagaactaataa 42190



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 243   aaaatccatggcttcttcctttcct 267
             ||||||||||||||||| |||||||
Sbjct: 42262 aaaatccatggcttctttctttcct 42286
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                            
Query: 54       tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 112
                |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 24921520 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 24921579

                                          
Query: 113      gtgtaagaactgaaaagaaataataa 138
                ||||| | || |||||||| ||||||
Sbjct: 24921580 gtgtacgcacagaaaagaactaataa 24921605



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 243      aaaatccatggcttcttcctttcct 267
                ||||||||||||||||| |||||||
Sbjct: 24921677 aaaatccatggcttctttctttcct 24921701
to top
>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full
            insert sequence
          Length = 2907

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 54   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 112
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 2795 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 2736

                                      
Query: 113  gtgtaagaactgaaaagaaataataa 138
            ||||| | || |||||||| ||||||
Sbjct: 2735 gtgtacgcacagaaaagaactaataa 2710



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 243  aaaatccatggcttcttcctttcct 267
            ||||||||||||||||| |||||||
Sbjct: 2638 aaaatccatggcttctttctttcct 2614
to top
>dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A02, full
            insert sequence
          Length = 1712

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 54   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 112
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 1701 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 1642

                                      
Query: 113  gtgtaagaactgaaaagaaataataa 138
            ||||| | || |||||||| ||||||
Sbjct: 1641 gtgtacgcacagaaaagaactaataa 1616



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 243  aaaatccatggcttcttcctttcct 267
            ||||||||||||||||| |||||||
Sbjct: 1544 aaaatccatggcttctttctttcct 1520
to top
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 54    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 112
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 49634 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 49693

                                       
Query: 113   gtgtaagaactgaaaagaaataataa 138
             ||||| | || |||||||| ||||||
Sbjct: 49694 gtgtacgcacagaaaagaactaataa 49719



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 243   aaaatccatggcttcttcctttcct 267
             ||||||||||||||||| |||||||
Sbjct: 49791 aaaatccatggcttctttctttcct 49815
to top
>emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 in linkage group 8,
             complete sequence
          Length = 150519

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 17    aaataatcttagattcagtttt 38
             ||||||||||||||||||||||
Sbjct: 27178 aaataatcttagattcagtttt 27199
to top
>emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5 on chromosome X, complete
            sequence
          Length = 39550

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 117  aagaactgaaaagaaataataacatt 142
            |||| |||||||||||||||||||||
Sbjct: 3229 aagagctgaaaagaaataataacatt 3204
to top
>gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence
          Length = 249

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 242 taaaatccatggcttcttcctttcc 266
           |||||||||||||||||| ||||||
Sbjct: 73  taaaatccatggcttctttctttcc 97
to top
>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 45     ctacaatgctgacacgatatattgt 69
              |||||||||||| ||||||||||||
Sbjct: 122731 ctacaatgctgaaacgatatattgt 122707
to top
>emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chromosome 13q21.33-22.3
             Contains a signal sequence receptor, alpha
             (translocon-associated protein alpha) (SSR1) pseudogene,
             complete sequence
          Length = 151603

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 200   tcccaggctccagcaagagtt 220
             |||||||||||||||||||||
Sbjct: 87107 tcccaggctccagcaagagtt 87087
to top
>gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, complete sequence
          Length = 67124

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 200  tcccaggctccagcaagagtt 220
            |||||||||||||||||||||
Sbjct: 3598 tcccaggctccagcaagagtt 3618
to top
>gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N11, complete sequence
          Length = 83029

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 200   tcccaggctccagcaagagtt 220
             |||||||||||||||||||||
Sbjct: 34025 tcccaggctccagcaagagtt 34005
to top
>gb|AY110434.1| Zea mays CL533_2 mRNA sequence
          Length = 843

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 242 taaaatccatggcttcttcctttcc 266
           |||||||||||||||||| ||||||
Sbjct: 673 taaaatccatggcttctttctttcc 649
to top
>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar IR64
          Length = 2599

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 243  aaaatccatggcttcttcctttcct 267
            ||||||||||||||||| |||||||
Sbjct: 2599 aaaatccatggcttctttctttcct 2575
to top
>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence
          Length = 153426

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   gaaaagaaataataacattg 143
             ||||||||||||||||||||
Sbjct: 39323 gaaaagaaataataacattg 39342
to top
>gb|AC186150.1| Ornithorhynchus anatinus chromosome UNK clone OABb-264K6, complete
             sequence
          Length = 149168

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   aaacatcccatttgacagaggaag 179
             ||||||||||||| ||||||||||
Sbjct: 46046 aaacatcccattttacagaggaag 46069
to top
>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence
          Length = 186062

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    aaattgtgtaagaactgaaa 127
              ||||||||||||||||||||
Sbjct: 107485 aaattgtgtaagaactgaaa 107504
to top
>gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome 13, complete sequence
          Length = 205869

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   ccatggcttcttcctttcct 267
             ||||||||||||||||||||
Sbjct: 31484 ccatggcttcttcctttcct 31503
to top
>gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, complete sequence
          Length = 192584

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 104    ttacaaattgtgtaagaactgaaaagaaataa 135
              |||||||| || ||||||||||||| ||||||
Sbjct: 132634 ttacaaatagtttaagaactgaaaataaataa 132665
to top
>gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome 18, complete sequence
          Length = 190023

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   cccaggctccagcaagagtt 220
             ||||||||||||||||||||
Sbjct: 97827 cccaggctccagcaagagtt 97808
to top
>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 170859

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   tgaaaagaaataataacatt 142
             ||||||||||||||||||||
Sbjct: 30825 tgaaaagaaataataacatt 30844
to top
>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete
           sequence
          Length = 164559

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 111 ttgtgtaagaactgaaaagaaata 134
           |||||||||||||||||| |||||
Sbjct: 55  ttgtgtaagaactgaaaaaaaata 32
to top
>emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chromosome 9 Contains the 3'
              end of a novel gene, and a novel pseudogene, complete
              sequence
          Length = 131366

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 111    ttgtgtaagaactgaaaagaaata 134
              |||||||||||||||||| |||||
Sbjct: 129421 ttgtgtaagaactgaaaaaaaata 129398
to top
>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   tgaaaagaaataataacatt 142
             ||||||||||||||||||||
Sbjct: 41625 tgaaaagaaataataacatt 41606
to top
>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the
             Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes
             and two CpG islands, complete sequence
          Length = 187709

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   ttcattcccaggctccagca 214
             ||||||||||||||||||||
Sbjct: 35935 ttcattcccaggctccagca 35916
to top
>emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo-8-phosphate synthase, exons
           1-4
          Length = 1812

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 taagaactgaaaagaaataa 135
           ||||||||||||||||||||
Sbjct: 639 taagaactgaaaagaaataa 620
to top
>emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in linkage group 24,
             complete sequence
          Length = 152666

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    atgctgacacgatatattgt 69
             ||||||||||||||||||||
Sbjct: 54458 atgctgacacgatatattgt 54439
to top
>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     atgctgacacgatatattgt 69
              ||||||||||||||||||||
Sbjct: 198757 atgctgacacgatatattgt 198776
to top
>emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 in linkage group 20,
             complete sequence
          Length = 86384

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   tgaaaagaaataataacatt 142
             ||||||||||||||||||||
Sbjct: 84744 tgaaaagaaataataacatt 84763
to top
>gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, complete sequence
          Length = 96678

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   acaaattgtgtaagaactga 125
             ||||||||||||||||||||
Sbjct: 56401 acaaattgtgtaagaactga 56382
to top
>gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, complete sequence
          Length = 148110

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   ttgttcattcccaggctcca 211
             ||||||||||||||||||||
Sbjct: 70836 ttgttcattcccaggctcca 70817
to top
>gb|AC093302.2| Homo sapiens chromosome 5 clone RP11-60A8, complete sequence
          Length = 179385

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    agagactaaaatccatggct 255
              ||||||||||||||||||||
Sbjct: 112680 agagactaaaatccatggct 112699
to top
>dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130097D18
           product:unclassifiable, full insert sequence
          Length = 719

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 cccaggctccagcaagagtt 220
           ||||||||||||||||||||
Sbjct: 28  cccaggctccagcaagagtt 9
to top
>gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, complete sequence
          Length = 41476

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  gtgtaagaactgaaaagaaa 132
            ||||||||||||||||||||
Sbjct: 5836 gtgtaagaactgaaaagaaa 5855
to top
>gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, complete sequence
          Length = 62355

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    aagccaaaataatcttagat 30
             ||||||||||||||||||||
Sbjct: 14713 aagccaaaataatcttagat 14732
to top
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 116    taagaactgaaaagaaataataac 139
              |||||||| |||||||||||||||
Sbjct: 183747 taagaacttaaaagaaataataac 183724
to top
>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete
             sequence
          Length = 159731

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   gaaaagaaataataacattg 143
             ||||||||||||||||||||
Sbjct: 65829 gaaaagaaataataacattg 65810
to top
>emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, complete sequence
          Length = 145569

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    atgctgacacgatatattgt 69
             ||||||||||||||||||||
Sbjct: 50947 atgctgacacgatatattgt 50928
to top
>emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20,
             complete sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    atgctgacacgatatattgt 69
             ||||||||||||||||||||
Sbjct: 46843 atgctgacacgatatattgt 46824
to top
>emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in linkage group 20,
           complete sequence
          Length = 9831

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 123 tgaaaagaaataataacatt 142
           ||||||||||||||||||||
Sbjct: 360 tgaaaagaaataataacatt 379
to top
>emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 in linkage group 20,
             complete sequence
          Length = 189717

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    atgctgacacgatatattgt 69
             ||||||||||||||||||||
Sbjct: 78894 atgctgacacgatatattgt 78875
to top
>emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in linkage group 20,
             complete sequence
          Length = 209360

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    atgctgacacgatatattgt 69
             ||||||||||||||||||||
Sbjct: 38990 atgctgacacgatatattgt 38971
to top
>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation
            factor 4 gamma (eif(iso)4g gene), cultivar Tog5681
          Length = 2699

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 244  aaatccatggcttcttcctttcct 267
            |||||||||||||||| |||||||
Sbjct: 2699 aaatccatggcttctttctttcct 2676
to top
>emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-99L13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178433

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 136   taacattggaggagacacaaaaac 159
             ||||||||||||||||||| ||||
Sbjct: 93093 taacattggaggagacacataaac 93116
to top
>gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete sequence
          Length = 136080

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   ttcccaggctccagcaagag 218
             ||||||||||||||||||||
Sbjct: 42008 ttcccaggctccagcaagag 41989
to top
>emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in linkage group 1,
              complete sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     atgctgacacgatatattgt 69
              ||||||||||||||||||||
Sbjct: 135077 atgctgacacgatatattgt 135096
to top
>gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  gaaaagaaataataacattg 143
            ||||||||||||||||||||
Sbjct: 7379 gaaaagaaataataacattg 7360
to top
>emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from 12 cosmids, map Xp21.1 region
              DXS709-SRPX, complete sequence
          Length = 337101

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    agagactaaaatccatggct 255
              ||||||||||||||||||||
Sbjct: 320310 agagactaaaatccatggct 320329


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,550,366
Number of Sequences: 3902068
Number of extensions: 3550366
Number of successful extensions: 82556
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82411
Number of HSP's gapped (non-prelim): 139
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top