ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
2dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
3dbj|AK070862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
4ref|XM_481557.1| Oryza sativa (japonica cultivar-group), mRNA 100 6e-18
5gb|AY224584.1| Oryza sativa (japonica cultivar-group) isolate 30... 100 6e-18
6gb|AY107186.1| Zea mays PCO133868 mRNA sequence 80 5e-12
7emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in ... 46 0.072
8emb|AL445526.9| Human DNA sequence from clone RP11-32I2 on chrom... 44 0.28
9gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, com... 44 0.28
10gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 44 0.28
11emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chr... 44 0.28
12gb|AC100269.7| Mus musculus chromosome 5, clone RP23-67B9, compl... 42 1.1
13gb|AC103388.6| Mus musculus chromosome 7, clone RP24-403B15, com... 42 1.1
14ref|XM_534392.2| PREDICTED: Canis familiaris similar to Nuclear ... 42 1.1
15gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome... 42 1.1
16gb|AC093449.19| Mus musculus strain 129/Sv clone ct7-328a16 map ... 42 1.1
17gb|AC115007.6| Mus musculus chromosome 5, clone RP24-188P11, com... 42 1.1
18dbj|AK053908.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 42 1.1
19dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
20gb|AC116098.3| Homo sapiens chromosome 3 clone CTD-2329B17, comp... 42 1.1
21gb|AC062022.6| Homo sapiens BAC clone RP11-220I15 from 2, comple... 42 1.1
22gb|AC015542.17| Homo sapiens 3 BAC RP11-38B6 (Roswell Park Cance... 42 1.1
23dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
24emb|AJ550897.1|TRU550897 Takifugu rubripes ptr1 gene for parathy... 42 1.1
25emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chr... 42 1.1
26ref|NM_123438.2| Arabidopsis thaliana AGP24 AT5G40730 (AGP24) mR... 40 4.4
27gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, co... 40 4.4
28gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, com... 40 4.4
29ref|NM_007332.1| Homo sapiens transient receptor potential catio... 40 4.4
30gb|AY672745.1| Allium sativum LEAFY splice variant 2 mRNA, parti... 40 4.4
31gb|AY563104.1| Allium sativum floral meristem identity control p... 40 4.4
32gb|AY563105.1| Allium sativum LEAFY spliced variant 1 mRNA, part... 40 4.4
33ref|XM_647361.1| Entamoeba histolytica HM-1:IMSS pre-mRNA splici... 40 4.4
34gb|AC113064.8| Mus musculus chromosome 5, clone RP23-262H7, comp... 40 4.4
35ref|XM_758525.1| Theileria parva strain Muguga chromosome 3 hypo... 40 4.4
36gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's ... 40 4.4
37emb|AL136372.8| Human DNA sequence from clone RP11-134C1 on chro... 40 4.4
38emb|Y10601.1|HSRNAALP Homo sapiens mRNA for ankyrin-like protein 40 4.4
39gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 gen... 40 4.4
40gb|AC090133.6| Homo sapiens chromosome 8, clone RP11-813L8, comp... 40 4.4
41gb|AC123777.4| Homo sapiens chromosome 8, clone RP11-252C15, com... 40 4.4
42emb|BX284634.8| Mouse DNA sequence from clone RP23-92B18 on chro... 40 4.4
43emb|CR859616.1| Pongo pygmaeus mRNA; cDNA DKFZp468J165 (from clo... 40 4.4
44gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, co... 40 4.4
45gb|AY070748.1| Arabidopsis thaliana AT5g40730/MNF13_250 mRNA seq... 40 4.4
46gb|AC016057.6| Homo sapiens chromosome 8, clone RP11-383H13, com... 40 4.4
47dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
48dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
49emb|BX833524.1|CNS09Z9Z Arabidopsis thaliana Full-length cDNA Co... 40 4.4
50emb|BX834072.1|CNS09Z1K Arabidopsis thaliana Full-length cDNA Co... 40 4.4
51emb|BX833879.1|CNS09Z5C Arabidopsis thaliana Full-length cDNA Co... 40 4.4
52emb|BX833352.1|CNS09Z2W Arabidopsis thaliana Full-length cDNA Co... 40 4.4
53emb|BX833320.1|CNS09Z2R Arabidopsis thaliana Full-length cDNA Co... 40 4.4
54emb|BX832950.1|CNS09Z4D Arabidopsis thaliana Full-length cDNA Co... 40 4.4
55emb|BX832847.1|CNS09Z57 Arabidopsis thaliana Full-length cDNA Co... 40 4.4
56gb|AC074030.17|AC074030 Homo sapiens 12 BAC RP11-425I22 (Roswell... 40 4.4
57gb|AC016144.13|AC016144 Homo sapiens 12 BAC RP11-367O10 (Roswell... 40 4.4
58dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.4
59emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 ... 40 4.4
60dbj|AP003386.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.4
61gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 40 4.4
62gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
63emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chro... 40 4.4
64gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  103 bits (52), Expect = 4e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                            
Query: 238      ccaattcaatttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatct 297
                |||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 13733517 ccaattcgttttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatct 13733576

                                        
Query: 298      ctctaccaggtacattgaccttta 321
                |||| ||||| || ||||||||||
Sbjct: 13733577 ctcttccaggaacgttgaccttta 13733600
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>dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0406D01
          Length = 163932

 Score =  103 bits (52), Expect = 4e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                         
Query: 238   ccaattcaatttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatct 297
             |||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 47586 ccaattcgttttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatct 47645

                                     
Query: 298   ctctaccaggtacattgaccttta 321
             |||| ||||| || ||||||||||
Sbjct: 47646 ctcttccaggaacgttgaccttta 47669
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>dbj|AK070862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073E23, full
            insert sequence
          Length = 3546

 Score =  103 bits (52), Expect = 4e-19
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                        
Query: 238  ccaattcaatttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatct 297
            |||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 3272 ccaattcgttttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatct 3213

                                    
Query: 298  ctctaccaggtacattgaccttta 321
            |||| ||||| || ||||||||||
Sbjct: 3212 ctcttccaggaacgttgaccttta 3189
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>ref|XM_481557.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1278

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                        
Query: 248  ttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatctctctaccagg 307
            |||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 1278 ttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatctctcttccagg 1219

                          
Query: 308  tacattgaccttta 321
             || ||||||||||
Sbjct: 1218 aacgttgaccttta 1205
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>gb|AY224584.1| Oryza sativa (japonica cultivar-group) isolate 30858 unknown mRNA
          Length = 1704

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                        
Query: 248  ttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatctctctaccagg 307
            |||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 1704 ttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatctctcttccagg 1645

                          
Query: 308  tacattgaccttta 321
             || ||||||||||
Sbjct: 1644 aacgttgaccttta 1631
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>gb|AY107186.1| Zea mays PCO133868 mRNA sequence
          Length = 1187

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                       
Query: 255 cccaaaatctgtgagatacgtcgttcagcatccattggtatctctctaccaggtacattg 314
           ||||||||||||||||| |||||||||||||||   ||||| |||||||| || ||||||
Sbjct: 880 cccaaaatctgtgagatgcgtcgttcagcatccgcaggtatttctctacccggcacattg 821

                   
Query: 315 acctttag 322
           ||||||||
Sbjct: 820 acctttag 813
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>emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in linkage group 1,
            complete sequence
          Length = 180744

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 139  aaaaccaaacagaaataacaaaa 161
            |||||||||||||||||||||||
Sbjct: 7326 aaaaccaaacagaaataacaaaa 7348
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>emb|AL445526.9| Human DNA sequence from clone RP11-32I2 on chromosome 9 Contains a
              pseudogene similar to part of tumor necrosis factor,
              alpha-induced protein 1 (endothelial) (TNFAIP1) (EDP1),
              complete sequence
          Length = 127029

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 109    ttacctacctatatgtagacat 130
              ||||||||||||||||||||||
Sbjct: 113190 ttacctacctatatgtagacat 113211
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>gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, complete sequence
          Length = 196717

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 131    caaaagaaaaaaccaaacagaaataa 156
              ||||| ||||||||||||||||||||
Sbjct: 100755 caaaacaaaaaaccaaacagaaataa 100780
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>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 137     aaaaaaccaaacagaaataacaaaat 162
               |||||| |||||||||||||||||||
Sbjct: 1231254 aaaaaaacaaacagaaataacaaaat 1231229
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>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete
              sequence
          Length = 165720

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 139    aaaaccaaacagaaataacaaa 160
              ||||||||||||||||||||||
Sbjct: 137459 aaaaccaaacagaaataacaaa 137438
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>gb|AC100269.7| Mus musculus chromosome 5, clone RP23-67B9, complete sequence
          Length = 237273

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 138    aaaaaccaaacagaaataacaaaattaac 166
              |||||| ||||||||||||||||| ||||
Sbjct: 187808 aaaaacaaaacagaaataacaaaactaac 187836
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>gb|AC103388.6| Mus musculus chromosome 7, clone RP24-403B15, complete sequence
          Length = 164394

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 11    aaattacacccaaaatatcacacat 35
             |||||||||||||||| ||||||||
Sbjct: 41148 aaattacacccaaaatttcacacat 41124
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>ref|XM_534392.2| PREDICTED: Canis familiaris similar to Nuclear receptor coactivator 6
            (Amplified in breast cancer-3 protein) (Cancer-amplified
            transcriptional coactivator ASC-2) (Activating signal
            cointegrator-2) (ASC-2) (Peroxisome
            proliferator-activated receptor-interacting protein)
            (PPAR-..., transcript variant 1 (LOC477202), mRNA
          Length = 6872

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 29   cacacatttacaaggatcaag 49
            |||||||||||||||||||||
Sbjct: 6368 cacacatttacaaggatcaag 6348
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>gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome 16, complete sequence
          Length = 202652

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 132    aaaagaaaaaaccaaacagaaataacaaa 160
              |||||||||| |||||||||||| |||||
Sbjct: 133245 aaaagaaaaatccaaacagaaattacaaa 133273
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>gb|AC093449.19| Mus musculus strain 129/Sv clone ct7-328a16 map X, complete sequence
          Length = 153728

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 163   taactacagctacaaagaaag 183
             |||||||||||||||||||||
Sbjct: 44419 taactacagctacaaagaaag 44439
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>gb|AC115007.6| Mus musculus chromosome 5, clone RP24-188P11, complete sequence
          Length = 155084

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 138   aaaaaccaaacagaaataacaaaattaac 166
             |||||| ||||||||||||||||| ||||
Sbjct: 75553 aaaaacaaaacagaaataacaaaactaac 75581
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>dbj|AK053908.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130320C01 product:unclassifiable, full
            insert sequence
          Length = 2644

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 132  aaaagaaaaaaccaaacagaaataacaaa 160
            |||||||||| |||||||||||| |||||
Sbjct: 1225 aaaagaaaaatccaaacagaaattacaaa 1253
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 137      aaaaaaccaaacagaaataacaaaa 161
                ||||| |||||||||||||||||||
Sbjct: 26566906 aaaaatccaaacagaaataacaaaa 26566882
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>gb|AC116098.3| Homo sapiens chromosome 3 clone CTD-2329B17, complete sequence
          Length = 120591

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   aggaagatactgtgagacatc 207
             |||||||||||||||||||||
Sbjct: 87962 aggaagatactgtgagacatc 87942
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>gb|AC062022.6| Homo sapiens BAC clone RP11-220I15 from 2, complete sequence
          Length = 151006

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 156    acaaaattaactacagctaca 176
              |||||||||||||||||||||
Sbjct: 112099 acaaaattaactacagctaca 112079
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>gb|AC015542.17| Homo sapiens 3 BAC RP11-38B6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155150

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    aggaagatactgtgagacatc 207
              |||||||||||||||||||||
Sbjct: 146837 aggaagatactgtgagacatc 146857
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>dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0049H05
          Length = 161934

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 137   aaaaaaccaaacagaaataacaaaa 161
             ||||| |||||||||||||||||||
Sbjct: 40620 aaaaatccaaacagaaataacaaaa 40596
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>emb|AJ550897.1|TRU550897 Takifugu rubripes ptr1 gene for parathyroid hormone receptor 1, exons
             1-13
          Length = 31774

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 137   aaaaaaccaaacagaaataacaaaattaa 165
             ||||||||||| ||||||||| |||||||
Sbjct: 29806 aaaaaaccaaaaagaaataaccaaattaa 29834
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>emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chromosome X, complete
             sequence
          Length = 197632

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 163   taactacagctacaaagaaag 183
             |||||||||||||||||||||
Sbjct: 46849 taactacagctacaaagaaag 46869
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>ref|NM_123438.2| Arabidopsis thaliana AGP24 AT5G40730 (AGP24) mRNA, complete cds
          Length = 446

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 catcaaaagaaaaaaccaaa 147
           ||||||||||||||||||||
Sbjct: 28  catcaaaagaaaaaaccaaa 47
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>gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, complete sequence
          Length = 164968

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 138   aaaaaccaaacagaaataacaaaa 161
             |||||||||||||||| |||||||
Sbjct: 44913 aaaaaccaaacagaaacaacaaaa 44936
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>gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, complete sequence
          Length = 197551

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ccattcaaaataccacaaat 79
             ||||||||||||||||||||
Sbjct: 29805 ccattcaaaataccacaaat 29786
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>ref|NM_007332.1| Homo sapiens transient receptor potential cation channel, subfamily
            A, member 1 (TRPA1), mRNA
          Length = 5190

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  gtagacatcaaaagaaaaaa 142
            ||||||||||||||||||||
Sbjct: 4328 gtagacatcaaaagaaaaaa 4309
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>gb|AY672745.1| Allium sativum LEAFY splice variant 2 mRNA, partial cds,
           alternatively spliced
          Length = 570

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 aagaaaaaaccaaacagaaa 153
           ||||||||||||||||||||
Sbjct: 301 aagaaaaaaccaaacagaaa 320
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>gb|AY563104.1| Allium sativum floral meristem identity control protein gene,
           partial cds
          Length = 682

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 aagaaaaaaccaaacagaaa 153
           ||||||||||||||||||||
Sbjct: 321 aagaaaaaaccaaacagaaa 340
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>gb|AY563105.1| Allium sativum LEAFY spliced variant 1 mRNA, partial cds
          Length = 506

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 aagaaaaaaccaaacagaaa 153
           ||||||||||||||||||||
Sbjct: 238 aagaaaaaaccaaacagaaa 257
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>ref|XM_647361.1| Entamoeba histolytica HM-1:IMSS pre-mRNA splicing factor PRP17,
           putative (117.t00032) partial mRNA
          Length = 1203

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 aaacagaaataacaaaatta 164
           ||||||||||||||||||||
Sbjct: 520 aaacagaaataacaaaatta 501
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>gb|AC113064.8| Mus musculus chromosome 5, clone RP23-262H7, complete sequence
          Length = 176176

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     ccattcaaaataccacaaat 79
              ||||||||||||||||||||
Sbjct: 133828 ccattcaaaataccacaaat 133809
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>ref|XM_758525.1| Theileria parva strain Muguga chromosome 3 hypothetical protein
            (TP03_0590) partial mRNA
          Length = 4743

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 26   tatcacacatttacaaggatcaag 49
            |||||||||||||||||| |||||
Sbjct: 2234 tatcacacatttacaaggctcaag 2257
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>gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 241078

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  tagacatcaaaagaaaaaac 143
            ||||||||||||||||||||
Sbjct: 8523 tagacatcaaaagaaaaaac 8542
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>emb|AL136372.8| Human DNA sequence from clone RP11-134C1 on chromosome 1q25.1-31.1
             Contains a zinc finger protein pseudogene, complete
             sequence
          Length = 165880

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    aaaatatcacacatttacaa 41
             ||||||||||||||||||||
Sbjct: 82940 aaaatatcacacatttacaa 82921
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>emb|Y10601.1|HSRNAALP Homo sapiens mRNA for ankyrin-like protein
          Length = 5190

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  gtagacatcaaaagaaaaaa 142
            ||||||||||||||||||||
Sbjct: 4328 gtagacatcaaaagaaaaaa 4309
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>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete
              sequence
          Length = 149758

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 145    aaacagaaataacaaaattaacta 168
              |||||||||||||||| |||||||
Sbjct: 101685 aaacagaaataacaaatttaacta 101708
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>gb|AC090133.6| Homo sapiens chromosome 8, clone RP11-813L8, complete sequence
          Length = 201279

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    aaagaaaaaaccaaacagaa 152
              ||||||||||||||||||||
Sbjct: 168463 aaagaaaaaaccaaacagaa 168444
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>gb|AC123777.4| Homo sapiens chromosome 8, clone RP11-252C15, complete sequence
          Length = 175943

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    aaagaaaaaaccaaacagaa 152
              ||||||||||||||||||||
Sbjct: 111661 aaagaaaaaaccaaacagaa 111642
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>emb|BX284634.8| Mouse DNA sequence from clone RP23-92B18 on chromosome 11 Contains the
             3' end of the gene for a novel protein (C330012F17Rik,
             C130096N06Rik), the gene for a novel protein
             (2010316F05Rik), a novel gene, the Mtif2 gene for
             mitochondrial translational initiation factor 2, the
             Rps27a gene for ribosomal protein S27a, a ribosomal
             protein L7 (Rpl7) pseudogene, the gene for a novel protein
             (1700034F02Rik), a novel gene and a CpG island, complete
             sequence
          Length = 176038

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 133   aaagaaaaaaccaaacagaaataa 156
             ||||| ||||||||||||||||||
Sbjct: 44196 aaagagaaaaccaaacagaaataa 44173
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>emb|CR859616.1| Pongo pygmaeus mRNA; cDNA DKFZp468J165 (from clone DKFZp468J165)
          Length = 2880

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  agacatcaaaagaaaaaacc 144
            ||||||||||||||||||||
Sbjct: 1098 agacatcaaaagaaaaaacc 1117
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>gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, complete sequence
          Length = 196931

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    gtagacatcaaaagaaaaaa 142
              ||||||||||||||||||||
Sbjct: 186011 gtagacatcaaaagaaaaaa 186030
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>gb|AY070748.1| Arabidopsis thaliana AT5g40730/MNF13_250 mRNA sequence
          Length = 383

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 catcaaaagaaaaaaccaaa 147
           ||||||||||||||||||||
Sbjct: 22  catcaaaagaaaaaaccaaa 41
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>gb|AC016057.6| Homo sapiens chromosome 8, clone RP11-383H13, complete sequence
          Length = 197785

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    gtagacatcaaaagaaaaaa 142
              ||||||||||||||||||||
Sbjct: 115320 gtagacatcaaaagaaaaaa 115339
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 145      aaacagaaataacaaaattaacta 168
                |||||||||||||||| |||||||
Sbjct: 16558557 aaacagaaataacaaatttaacta 16558534
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     aaataacaaaattaactaca 170
               ||||||||||||||||||||
Sbjct: 2061407 aaataacaaaattaactaca 2061388
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>emb|BX833524.1|CNS09Z9Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL60ZB03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 417

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 catcaaaagaaaaaaccaaa 147
           ||||||||||||||||||||
Sbjct: 15  catcaaaagaaaaaaccaaa 34
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>emb|BX834072.1|CNS09Z1K Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL94ZA10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 408

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 catcaaaagaaaaaaccaaa 147
           ||||||||||||||||||||
Sbjct: 13  catcaaaagaaaaaaccaaa 32
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>emb|BX833879.1|CNS09Z5C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL81ZB11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 412

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 catcaaaagaaaaaaccaaa 147
           ||||||||||||||||||||
Sbjct: 5   catcaaaagaaaaaaccaaa 24
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>emb|BX833352.1|CNS09Z2W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL47ZC02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 419

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 catcaaaagaaaaaaccaaa 147
           ||||||||||||||||||||
Sbjct: 18  catcaaaagaaaaaaccaaa 37
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>emb|BX833320.1|CNS09Z2R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL44ZE11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 416

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 catcaaaagaaaaaaccaaa 147
           ||||||||||||||||||||
Sbjct: 15  catcaaaagaaaaaaccaaa 34
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>emb|BX832950.1|CNS09Z4D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL25ZE12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 419

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 catcaaaagaaaaaaccaaa 147
           ||||||||||||||||||||
Sbjct: 18  catcaaaagaaaaaaccaaa 37
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>emb|BX832847.1|CNS09Z57 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL17ZD01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 421

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 catcaaaagaaaaaaccaaa 147
           ||||||||||||||||||||
Sbjct: 20  catcaaaagaaaaaaccaaa 39
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>gb|AC074030.17|AC074030 Homo sapiens 12 BAC RP11-425I22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163700

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   caaacagaaataacaaaatt 163
             ||||||||||||||||||||
Sbjct: 47077 caaacagaaataacaaaatt 47096
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>gb|AC016144.13|AC016144 Homo sapiens 12 BAC RP11-367O10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178453

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   caaacagaaataacaaaatt 163
             ||||||||||||||||||||
Sbjct: 15642 caaacagaaataacaaaatt 15623
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>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13
          Length = 85992

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   catcaaaagaaaaaaccaaa 147
             ||||||||||||||||||||
Sbjct: 75863 catcaaaagaaaaaaccaaa 75882
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>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24,
             complete sequence
          Length = 213091

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   aaaagaaaaaaccaaacaga 151
             ||||||||||||||||||||
Sbjct: 39458 aaaagaaaaaaccaaacaga 39439
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>dbj|AP003386.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-699F16, complete
             sequence
          Length = 72000

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   aaaagaaaaaaccaaacaga 151
             ||||||||||||||||||||
Sbjct: 19380 aaaagaaaaaaccaaacaga 19361
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>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    aaagaaagccgaggaagata 195
              ||||||||||||||||||||
Sbjct: 937274 aaagaaagccgaggaagata 937293
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 145      aaacagaaataacaaaattaacta 168
                |||||||||||||||| |||||||
Sbjct: 16566798 aaacagaaataacaaatttaacta 16566775
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>emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chromosome X, complete
             sequence
          Length = 190964

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   atcaaaagaaaaaaccaaac 148
             ||||||||||||||||||||
Sbjct: 68962 atcaaaagaaaaaaccaaac 68943
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>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08,
             complete sequence
          Length = 112268

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   aaataacaaaattaactaca 170
             ||||||||||||||||||||
Sbjct: 28248 aaataacaaaattaactaca 28229


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,032,389
Number of Sequences: 3902068
Number of extensions: 5032389
Number of successful extensions: 116381
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116108
Number of HSP's gapped (non-prelim): 273
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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