Clone Name | rbastl11g03 |
---|---|
Clone Library Name | barley_pub |
>emb|AL670951.6| Mouse DNA sequence from clone RP23-6N18 on chromosome 2, complete sequence Length = 207571 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 258 accagaagcttccttcttccat 279 |||||||||||||||||||||| Sbjct: 18688 accagaagcttccttcttccat 18667
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 ccacaaaataacattcagagt 236 ||||||||||||||||||||| Sbjct: 85791 ccacaaaataacattcagagt 85811
>gb|AC124055.6| Homo sapiens chromosome 11, clone RP4-608B4, complete sequence Length = 133815 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 tccatccaaatgaattgtcca 185 ||||||||||||||||||||| Sbjct: 50105 tccatccaaatgaattgtcca 50085
>emb|BX537106.6| Zebrafish DNA sequence from clone DKEY-98P3 in linkage group 20 Contains the gene for a novel protein similar to vertebrate dermatopontin (DPT), the atp1b1a gene for ATPase, Na+/K+ transporting, beta 1a polypeptide, the gene for a novel protein containing a homocysteine S-methyltransferase domain, the bivm gene for basic, immunoglobulin-like variable motif containing, the 5' end of the gene for a novel zinc finger protein (wu:fc06h02), the ndpkz4 gene for nucleoside diphosphate kinase-Z4 and the gene for a novel protein containing an inosine-uridine preferring nucleoside hydrolase doamin, complete sequence Length = 162005 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 atgcatcccacaaaataacat 229 ||||||||||||||||||||| Sbjct: 115020 atgcatcccacaaaataacat 115040
>emb|AJ006345.1|HSA6345 Homo sapiens KVLQT1 gene Length = 404123 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 tccatccaaatgaattgtcca 185 ||||||||||||||||||||| Sbjct: 203820 tccatccaaatgaattgtcca 203840
>gb|AC021424.6| Homo sapiens chromosome 11, clone RP11-38L8, complete sequence Length = 181025 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 tccatccaaatgaattgtcca 185 ||||||||||||||||||||| Sbjct: 179116 tccatccaaatgaattgtcca 179096
>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence Length = 198967 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 cagaagcttccttcttccatt 280 ||||||||||||||||||||| Sbjct: 19215 cagaagcttccttcttccatt 19235
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ccacaaaataacattcagagt 236 ||||||||||||||||||||| Sbjct: 3229194 ccacaaaataacattcagagt 3229174
>emb|BX005104.7| Zebrafish DNA sequence from clone DKEY-191D13 in linkage group 6, complete sequence Length = 152217 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 atgcatcccacaaaataacat 229 ||||||||||||||||||||| Sbjct: 144255 atgcatcccacaaaataacat 144275
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ccacaaaataacattcagagt 236 ||||||||||||||||||||| Sbjct: 3237899 ccacaaaataacattcagagt 3237879
>gb|AC002403.1|AC002403 Human Chromosome 11p15.5 pac pDJ608b4, complete sequence Length = 132960 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 tccatccaaatgaattgtcca 185 ||||||||||||||||||||| Sbjct: 50104 tccatccaaatgaattgtcca 50084
>gb|U90095.1|U90095 Human Chromosome 11p15.5 pac pDJ74k15, complete sequence Length = 120229 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 tccatccaaatgaattgtcca 185 ||||||||||||||||||||| Sbjct: 118690 tccatccaaatgaattgtcca 118670
>emb|AL928701.7| Zebrafish DNA sequence from clone CH211-201H21, complete sequence Length = 188745 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 atgcatcccacaaaataacat 229 ||||||||||||||||||||| Sbjct: 25972 atgcatcccacaaaataacat 25992
>emb|AL808141.8| Zebrafish DNA sequence from clone CH211-260N19, complete sequence Length = 147111 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 atgcatcccacaaaataacat 229 ||||||||||||||||||||| Sbjct: 17594 atgcatcccacaaaataacat 17614
>gb|AC167132.12| Mus musculus chromosome 8, clone RP24-335A22, complete sequence Length = 203284 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 cagaagcttccttcttccatt 280 ||||||||||||||||||||| Sbjct: 46662 cagaagcttccttcttccatt 46642
>gb|AC116798.11| Mus musculus chromosome 1, clone RP24-329K22, complete sequence Length = 173479 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 3481 cagaagcttccttcttccat 3462
>gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosome 18, complete sequence Length = 136832 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 62510 cagaagcttccttcttccat 62529
>gb|AC138109.3| Mus musculus BAC clone RP24-444I15 from chromosome 1, complete sequence Length = 209820 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 154326 cagaagcttccttcttccat 154307
>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete sequence Length = 193184 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 167982 cagaagcttccttcttccat 168001
>gb|AC156556.8| Mus musculus chromosome 7, clone RP23-92E8, complete sequence Length = 250903 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 109193 cagaagcttccttcttccat 109174
>ref|XM_975010.1| PREDICTED: Mus musculus hypothetical protein LOC669245 (LOC669245), mRNA Length = 2064 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 136 cagaagcttccttcttccat 117
>ref|XM_974871.1| PREDICTED: Mus musculus hypothetical protein LOC664925 (LOC664925), mRNA Length = 2064 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 136 cagaagcttccttcttccat 117
>ref|XM_973576.1| PREDICTED: Mus musculus hypothetical protein LOC674284 (LOC674284), mRNA Length = 2064 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 136 cagaagcttccttcttccat 117
>emb|CT025601.7| Mouse DNA sequence from clone RP23-424B7 on chromosome 17, complete sequence Length = 197841 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 85983 cagaagcttccttcttccat 85964
>gb|AC116470.12| Mus musculus chromosome 16, clone RP23-383N18, complete sequence Length = 194593 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 188090 cagaagcttccttcttccat 188109
>gb|AC138619.4| Mus musculus BAC clone RP23-278M16 from chromosome 18, complete sequence Length = 170250 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 17379 cagaagcttccttcttccat 17398
>gb|AC133889.9| Mus musculus chromosome 16, clone RP23-380I13, complete sequence Length = 235574 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 55849 cagaagcttccttcttccat 55868
>gb|AC113019.13| Mus musculus chromosome 7, clone RP23-185A21, complete sequence Length = 215975 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 acatccaagatcacagcaaa 158 |||||||||||||||||||| Sbjct: 76599 acatccaagatcacagcaaa 76580
>emb|AL390035.10| Human DNA sequence from clone RP13-9D14 on chromosome X Contains the 5' end of gene KIAA2022 and a CpG island, complete sequence Length = 148057 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 caaaatgcaaccagaagctt 268 |||||||||||||||||||| Sbjct: 108064 caaaatgcaaccagaagctt 108083
>gb|AC108004.3| Homo sapiens chromosome 17, clone CTD-2348K1, complete sequence Length = 116762 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 attcttgtgtcatttcttca 297 |||||||||||||||||||| Sbjct: 60550 attcttgtgtcatttcttca 60569
>dbj|AK148940.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120465J07 product:unclassifiable, full insert sequence Length = 2064 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 1929 cagaagcttccttcttccat 1948
>emb|AL732612.28| Mouse DNA sequence from clone RP23-31L20 on chromosome 11, complete sequence Length = 145244 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 14659 cagaagcttccttcttccat 14640
>emb|AL845360.10| Mouse DNA sequence from clone RP23-421L7 on chromosome 2, complete sequence Length = 196651 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 113584 cagaagcttccttcttccat 113603
>dbj|AP000412.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K3G3 Length = 24057 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 aaccagaagcttccttcttc 276 |||||||||||||||||||| Sbjct: 2599 aaccagaagcttccttcttc 2618
>emb|AJ338005.1|HSA338005 Homo sapiens genomic sequence surrounding NotI site, clone NR1-IF13C Length = 709 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 caagatcacagcaaaagaac 163 |||||||||||||||||||| Sbjct: 494 caagatcacagcaaaagaac 513
>gb|AC154739.2| Mus musculus BAC clone RP23-117B4 from 9, complete sequence Length = 196406 Score = 40.1 bits (20), Expect = 4.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 141 atccaagatcacagcaaaagaa-catccatcc 171 ||||||||||||| |||||||| ||||||||| Sbjct: 114759 atccaagatcacatcaaaagaatcatccatcc 114790
>gb|AC154630.2| Mus musculus BAC clone RP23-319C8 from 9, complete sequence Length = 182834 Score = 40.1 bits (20), Expect = 4.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 141 atccaagatcacagcaaaagaa-catccatcc 171 ||||||||||||| |||||||| ||||||||| Sbjct: 181240 atccaagatcacatcaaaagaatcatccatcc 181271
>emb|AL831756.8| Mouse DNA sequence from clone RP23-300P20 on chromosome 4, complete sequence Length = 164883 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cagaagcttccttcttccat 279 |||||||||||||||||||| Sbjct: 80777 cagaagcttccttcttccat 80796 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,328,881 Number of Sequences: 3902068 Number of extensions: 3328881 Number of successful extensions: 70274 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 70143 Number of HSP's gapped (non-prelim): 133 length of query: 339 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 317 effective length of database: 17,147,199,772 effective search space: 5435662327724 effective search space used: 5435662327724 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)