>ref|XM_480164.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 757

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 258 ccggtggacgaaggggagtagcccggtgcagtcggngagtag 299
           |||||||| || || ||||||||||||||||| || ||||||
Sbjct: 393 ccggtggaggatggtgagtagcccggtgcagtgggggagtag 352

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                         
Query: 258     ccggtggacgaaggggagtagcccggtgcagtcggngagtag 299
               |||||||| || || ||||||||||||||||| || ||||||
Sbjct: 3218361 ccggtggaggatggtgagtagcccggtgcagtgggggagtag 3218402

>dbj|AP003905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1177_E11
          Length = 92375

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 258   ccggtggacgaaggggagtagcccggtgcagtcggngagtag 299
             |||||||| || || ||||||||||||||||| || ||||||
Sbjct: 74441 ccggtggaggatggtgagtagcccggtgcagtgggggagtag 74482

>dbj|AK062907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F11, full
           insert sequence
          Length = 757

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 258 ccggtggacgaaggggagtagcccggtgcagtcggngagtag 299
           |||||||| || || ||||||||||||||||| || ||||||
Sbjct: 393 ccggtggaggatggtgagtagcccggtgcagtgggggagtag 352

>gb|AC125014.8| Mus musculus chromosome 16, clone RP24-149C21, complete sequence
          Length = 177471

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 9     caatggaaacattagcataata 30
             ||||||||||||||||||||||
Sbjct: 30233 caatggaaacattagcataata 30254

>gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, complete sequence
          Length = 241184

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 9      caatggaaacattagcataata 30
              ||||||||||||||||||||||
Sbjct: 198061 caatggaaacattagcataata 198082

>emb|BX927162.6| Zebrafish DNA sequence from clone CH211-147J13 in linkage group 18,
             complete sequence
          Length = 90057

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 11    atggaaacattagcataataat 32
             ||||||||||||||||||||||
Sbjct: 44255 atggaaacattagcataataat 44276

>emb|BX321919.10| Zebrafish DNA sequence from clone CH211-236B8, complete sequence
          Length = 163495

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 11    atggaaacattagcataataat 32
             ||||||||||||||||||||||
Sbjct: 83631 atggaaacattagcataataat 83652

>emb|CR854964.10| Zebrafish DNA sequence from clone DKEY-58J19 in linkage group 1, complete
              sequence
          Length = 180969

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 36     atagaaaacacaaaattaaatatcag 61
              |||||||||||||||||||| |||||
Sbjct: 134876 atagaaaacacaaaattaaagatcag 134851

>emb|BX072551.7| Zebrafish DNA sequence from clone CH211-117G17 in linkage group 17,
             complete sequence
          Length = 164264

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 193   tcagccagcggtcagcagcca 213
             |||||||||||||||||||||
Sbjct: 32355 tcagccagcggtcagcagcca 32335

>emb|CR381637.5| Zebrafish DNA sequence from clone DKEY-225P19 in linkage group 21,
             complete sequence
          Length = 171229

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 98    ccaatcctagtgctgctattagtat 122
             |||||||||||| ||||||||||||
Sbjct: 39036 ccaatcctagtgatgctattagtat 39060

>emb|BX511175.5| Zebrafish DNA sequence from clone DKEY-197A18 in linkage group 21,
              complete sequence
          Length = 231778

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 98     ccaatcctagtgctgctattagtat 122
              |||||||||||| ||||||||||||
Sbjct: 211512 ccaatcctagtgatgctattagtat 211536

>emb|BX322595.8| Zebrafish DNA sequence from clone RP71-69P9 in linkage group 22,
             complete sequence
          Length = 147460

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 30    aatccgatagaaaacacaaaattaa 54
             ||||| |||||||||||||||||||
Sbjct: 36448 aatccaatagaaaacacaaaattaa 36472

>gb|AC116875.10| Mus musculus chromosome 8, clone RP24-426B21, complete sequence
          Length = 188938

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   acacaaggaaacaagagttg 171
             ||||||||||||||||||||
Sbjct: 97327 acacaaggaaacaagagttg 97308

>gb|AC109807.9| Mus musculus chromosome 1, clone RP23-433B11, complete sequence
          Length = 227679

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    gccattttctaatcaacagt 229
              ||||||||||||||||||||
Sbjct: 205931 gccattttctaatcaacagt 205912

>ref|XM_720720.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00626)
            partial mRNA
          Length = 5760

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   agaaaacacaaaattaaata 57
            ||||||||||||||||||||
Sbjct: 3168 agaaaacacaaaattaaata 3187

>gb|AC073310.7| Homo sapiens BAC clone RP11-49G5 from 7, complete sequence
          Length = 125685

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 146   ctggacacacaaggaaacaagagt 169
             |||||||| |||||||||||||||
Sbjct: 68045 ctggacactcaaggaaacaagagt 68022

>emb|BX640465.7| Zebrafish DNA sequence from clone CH211-198B21 in linkage group 9,
              complete sequence
          Length = 214459

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     agaaaacacaaaattaaata 57
              ||||||||||||||||||||
Sbjct: 161349 agaaaacacaaaattaaata 161368

>emb|BX321859.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 4/10
          Length = 316050

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   tcagttgcctgcggaccggt 262
             ||||||||||||||||||||
Sbjct: 72393 tcagttgcctgcggaccggt 72374

>gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, complete sequence
          Length = 196931

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     atagaaaacacaaaattaaa 55
              ||||||||||||||||||||
Sbjct: 124839 atagaaaacacaaaattaaa 124820

>gb|AC016057.6| Homo sapiens chromosome 8, clone RP11-383H13, complete sequence
          Length = 197785

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    atagaaaacacaaaattaaa 55
             ||||||||||||||||||||
Sbjct: 54148 atagaaaacacaaaattaaa 54129

>gb|AC153954.3| Mus musculus 10 BAC RP24-236E2 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 151818

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    aaaacacaaaattaaatatc 59
             ||||||||||||||||||||
Sbjct: 61258 aaaacacaaaattaaatatc 61277

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 36       atagaaaacacaaaattaaa 55
                ||||||||||||||||||||
Sbjct: 29140273 atagaaaacacaaaattaaa 29140292

>emb|BX855605.4| Zebrafish DNA sequence from clone DKEY-266H7 in linkage group 5,
            complete sequence
          Length = 19656

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  ccattttctaatcaacagtc 230
            ||||||||||||||||||||
Sbjct: 4092 ccattttctaatcaacagtc 4073

>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1150_E04
          Length = 130973

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    atagaaaacacaaaattaaa 55
             ||||||||||||||||||||
Sbjct: 75391 atagaaaacacaaaattaaa 75410

>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1200_C08
          Length = 106214

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    atagaaaacacaaaattaaa 55
             ||||||||||||||||||||
Sbjct: 88230 atagaaaacacaaaattaaa 88249

>emb|BX649330.5| Zebrafish DNA sequence from clone CH211-140F21 in linkage group 22,
            complete sequence
          Length = 163964

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 30   aatccgatagaaaacacaaaattaaatatcag 61
            |||||||||||||| |||||| ||||||||||
Sbjct: 4309 aatccgatagaaaatacaaaa-taaatatcag 4339

>emb|BX072555.14| Zebrafish DNA sequence from clone DKEY-30O19 in linkage group 22,
              complete sequence
          Length = 227616

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 30     aatccgatagaaaacacaaaattaaatatcag 61
              |||||||||||||| |||||| ||||||||||
Sbjct: 142279 aatccgatagaaaatacaaaa-taaatatcag 142309

>emb|BX678772.5| Zebrafish DNA sequence from clone CH211-231N5 in linkage group 20,
            complete sequence
          Length = 112760

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   ttaaatatgagcccagctac 92
            ||||||||||||||||||||
Sbjct: 6067 ttaaatatgagcccagctac 6048

>emb|BX004874.11| Zebrafish DNA sequence from clone CH211-39E15 in linkage group 19,
              complete sequence
          Length = 165154

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                              
Query: 30     aatccgatagaaaacacaaaattaaatatcag 61
              ||||| ||||||||||| ||||||||||||||
Sbjct: 149039 aatccaatagaaaacac-aaattaaatatcag 149009

>gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, complete sequence
          Length = 242449

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     aacacaaaattaaatatcag 61
              ||||||||||||||||||||
Sbjct: 138631 aacacaaaattaaatatcag 138612


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,702,810
Number of Sequences: 3902068
Number of extensions: 2702810
Number of successful extensions: 57451
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 57365
Number of HSP's gapped (non-prelim): 88
length of query: 299
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 277
effective length of database: 17,147,199,772
effective search space: 4749774336844
effective search space used: 4749774336844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)