ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11g01 |
|---|---|
| Clone Library Name | barley_pub |
>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID| domain-containing protein 1B) (Osa homolog 2) (hOsa2) (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated factor 250b) (BAF250B) Length = 2236 Score = 31.2 bits (69), Expect = 0.68 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 5/48 (10%) Frame = +1 Query: 160 PSIHHYGRQGGPTTAEPSP----KAQEAAAS-CRAWTGAAASQQGGSP 288 PS +QGGP P P KAQEAAA+ +A +A S+QG P Sbjct: 905 PSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFP 952
>MTSS1_HUMAN (O43312) Metastasis suppressor protein 1 (Missing in metastasis| protein) (Metastasis suppressor YGL-1) Length = 755 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +1 Query: 187 GGPTTAEPSPKAQEAAASCRAWTGAAASQQG 279 GGPTTA P A E A R+ T +AA++ G Sbjct: 440 GGPTTASGPPAAAEEAQRPRSMTVSAATRPG 470
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 550 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/45 (31%), Positives = 18/45 (40%) Frame = +1 Query: 160 PSIHHYGRQGGPTTAEPSPKAQEAAASCRAWTGAAASQQGGSPTR 294 PS H GP T + P A++ R TG + G P R Sbjct: 397 PSGHRNAGPSGPGTGQARPYAKKGPGGARPGTGGPVGARSGGPGR 441
>OVO_DROME (P51521) Protein ovo (Protein shaven baby)| Length = 1351 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = +1 Query: 133 REQQAP*IHPSIHHYGRQGGPTTAEPSPKAQEAAASCRAWTGAAAS 270 ++Q P H S HH + PSP A AAA+ A AAA+ Sbjct: 972 QQQPQPQSHHSHHHGHGHDNSNMSLPSPTAAAAAAAAAAAAAAAAA 1017
>TRUD_HALSA (Q9HSG5) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 434 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +1 Query: 187 GGPTTAEP--SPKAQEAAASCRAWTGAAA 267 G PT EP S +A+E A R WTGA A Sbjct: 207 GAPTEHEPADSQRAREYVAETRDWTGALA 235
>MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)| Length = 403 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/46 (32%), Positives = 17/46 (36%) Frame = +1 Query: 160 PSIHHYGRQGGPTTAEPSPKAQEAAASCRAWTGAAASQQGGSPTRA 297 P HH+ P+ A AA S A G A GG P A Sbjct: 179 PHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASA 224
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = +1 Query: 193 PTTAEPSPKAQEA----AASCRAWTGAAASQQGG 282 P+TAEP P A EA A + + GAA QGG Sbjct: 308 PSTAEPRPPAGEAQGKSATTVPSGLGAAEQTQGG 341
>HXA13_HUMAN (P31271) Homeobox protein Hox-A13 (Hox-1J)| Length = 388 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = +1 Query: 193 PTTAEPSPKAQEAAASCRAWTGAAASQQGG 282 P A PS A AAA+ A AAAS GG Sbjct: 109 PGEAPPSAAAAAAAAAAAAAAAAAASSSGG 138
>HXA13_MOUSE (Q62424) Homeobox protein Hox-A13 (Hox-1.10)| Length = 386 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = +1 Query: 193 PTTAEPSPKAQEAAASCRAWTGAAASQQGG 282 P A PS A AAA+ A AAAS GG Sbjct: 109 PGEAPPSAAAAAAAAAAAAAAAAAASSSGG 138
>FAS2_SCHPO (Q10289) Fatty acid synthase alpha subunit (EC 2.3.1.86) (p190/210)| [Includes: Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ket Length = 1842 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 193 PTTAEPSPKAQEAAASCRAWTGAAASQQGGSPTRAL 300 P + +PK + AAA+ A T A A Q +P AL Sbjct: 105 PASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAAL 140
>LPXD_RHILO (Q98MC4) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase| (EC 2.3.1.-) Length = 351 Score = 27.3 bits (59), Expect = 9.8 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 5/95 (5%) Frame = +1 Query: 16 ASSLIIINKRHSSSICVRVSVHACLDPXXXXXXXXXXLA-----REQQAP*IHPSIHHYG 180 A++L+ ++ R +S++ + A L P +A R QQA G Sbjct: 47 ANALVFVDGRRNSALMPSLRAAAVLCPAEFANKAPSSVAVLIHPRPQQA------FALVG 100 Query: 181 RQGGPTTAEPSPKAQEAAASCRAWTGAAASQQGGS 285 R PT A P P E S A A + G+ Sbjct: 101 RLLFPTAATPGPMTSETGVSAHAHIDPTAHVEAGA 135
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 27.3 bits (59), Expect = 9.8 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 8/58 (13%) Frame = +1 Query: 172 HYGRQGGPTTAEPSPKA--------QEAAASCRAWTGAAASQQGGSPTRALLLQRRPG 321 H G GP +P P+A Q+AAA +A A QQ A +R G Sbjct: 325 HPGMSHGPPNGQPGPQAAAAQHAAQQQAAAQAQAQAAAQQQQQQQREQEAAAAAQRNG 382 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,441,852 Number of Sequences: 219361 Number of extensions: 593877 Number of successful extensions: 1923 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1839 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1919 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
