>DEF2_COXBU (Q83AK6) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) (Polypeptide|
           deformylase 2)
          Length = 209

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 212 IEGCSSIYARFGIGSKEIHLLLSVWVYM*PISAREN*MLQYHKK 81
           IEGC S+  + G+  + +H+ L+ W+Y     A      +YH++
Sbjct: 98  IEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALSKIKREYHRE 141

>SYGA_RICPR (Q9ZCB0) Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)|
           (Glycine--tRNA ligase alpha chain) (GlyRS)
          Length = 289

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 51  AMMITCAIDT--FFMILQHSILPG*NRLHIHPNRQQQVDLLATNTKPSIDR*ASLY 212
           A ++ C  D   F   +Q S  PG +R  +HPNR Q         KPS D    LY
Sbjct: 40  ATVLRCLGDKPWFIAYVQPSRRPGDSRYGMHPNRMQHYYQFQVILKPSPDNIQDLY 95

>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3|
          Length = 465

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 279 CIWVLVIHKSGREICSGLCACIYRGMLIYLCSVW 178
           C++V V+  +   +C  +  C+Y G+  + C +W
Sbjct: 393 CVYVCVMESACVCVCMCVYVCVYSGVRYFHCPLW 426

>YDCO_ECOLI (P76103) Inner membrane protein ydcO|
          Length = 391

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 332 SHDASIARPIQLS*YAECVYGYLLSTKAAGRSAPVFVLVFIEG-CSSIYARFGIGS 168
           +H  S+A P+ L   A      + + KAAG SAPV  L+   G  + +++ FG+ S
Sbjct: 209 AHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVYS 264

>SYGA_RICCN (Q92G10) Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)|
           (Glycine--tRNA ligase alpha chain) (GlyRS)
          Length = 288

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 93  LQHSILPG*NRLHIHPNRQQQVDLLATNTKPSIDR*ASLY 212
           +Q S  PG +R  +HPNR Q         KPS D    LY
Sbjct: 56  VQPSRRPGDSRYGMHPNRMQHYYQFQVILKPSPDNIQELY 95

>GNPTA_MOUSE (Q69ZN6) N-acetylglucosamine-1-phosphotransferase subunits alpha/beta|
            precursor (EC 2.7.8.17) (GlcNAc-1-phosphotransferase
            alpha/beta subunits)
            (UDP-N-acetylglucosamine-1-phosphotransferase alpha/beta
            subunits) (Stealth protein GNPTAB) [Conta
          Length = 1235

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +3

Query: 54   MMITCAIDTFFMILQHSILPG*NRLHIHPNRQQQVDLLATNTKPSIDR*ASLYKYKHKDR 233
            M+I C+      I Q + +P     +  PN       L TN KP  D+    YK K+K R
Sbjct: 1032 MLINCSKMLPANITQLNNIPPTQEAYYDPNLPPVTKSLVTNCKPVTDKIHKAYKDKNKYR 1091


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,449,570
Number of Sequences: 219361
Number of extensions: 1085066
Number of successful extensions: 2096
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2096
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)