ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PMTY_SCHPO (O42933) Probable dolichyl-phosphate-mannose--protein... 30 4.2
2UD19_HUMAN (O60656) UDP-glucuronosyltransferase 1-9 precursor (E... 30 4.2
3UD12_HUMAN (P36509) UDP-glucuronosyltransferase 1-2 precursor (E... 30 4.2
4ISPH2_RHOPA (Q6N1Y1) 4-hydroxy-3-methylbut-2-enyl diphosphate re... 28 9.4

>PMTY_SCHPO (O42933) Probable dolichyl-phosphate-mannose--protein|
           mannosyltransferase C16C6.09 (EC 2.4.1.109)
          Length = 778

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 149 FFPSDLFFFKITEIVHYVLASFSSSYQLFLHNYYSVYL 36
           F+ S +FF+ +T + HY L  F    QLFLH+Y   +L
Sbjct: 644 FYRSTMFFY-MTYVFHY-LPFFIMGRQLFLHHYLPAHL 679



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>UD19_HUMAN (O60656) UDP-glucuronosyltransferase 1-9 precursor (EC 2.4.1.17)|
           (UDP-glucuronosyltransferase 1A9) (UDPGT) (UGT1*9)
           (UGT1-9) (UGT1.9) (UGT-1I) (UGT1I)
          Length = 530

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -1

Query: 177 KKVLEHMRIFFSF*SIFLQNYRNCPLCISEFFFFLPTVFTQLLQC 43
           KK++E+++   SF ++FL  + NC L ++++F     VF + + C
Sbjct: 131 KKLVEYLKES-SFDAVFLDPFDNCGLIVAKYFSLPSVVFARGILC 174



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>UD12_HUMAN (P36509) UDP-glucuronosyltransferase 1-2 precursor (EC 2.4.1.17)|
           (UDP-glucuronosyltransferase 1A2) (UDPGT) (UGT1*2)
           (UGT1-02) (UGT1.2) (UGT-1B) (UGT1B) (HLUGP4)
          Length = 530

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -1

Query: 177 KKVLEHMRIFFSF*SIFLQNYRNCPLCISEFFFFLPTVFTQLLQC 43
           KK++E+++   SF ++FL  + NC L ++++F     VF + + C
Sbjct: 131 KKLVEYLKES-SFDAVFLDPFDNCGLIVAKYFSLPSVVFARGILC 174



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>ISPH2_RHOPA (Q6N1Y1) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 (EC|
           1.17.1.2)
          Length = 320

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 267 AACAQSTKVTRTRSSHHFNRARAGSILLPGSFYHPDVV 380
           A C   TKV R  ++ HF R R   ILL G  +HP+VV
Sbjct: 101 ATCPLVTKVHR-EAAIHFKRGR--EILLIGHSHHPEVV 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,087,143
Number of Sequences: 219361
Number of extensions: 1297726
Number of successful extensions: 2852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2852
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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