ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RSE1_KLULA (Q6CXH8) Pre-mRNA-splicing factor RSE1 29 3.4
2VGLP_BEV (P23052) Peplomer glycoprotein precursor 28 5.8
3ATG26_ASHGO (Q751Z4) Sterol 3-beta-glucosyltransferase (EC 2.4.1... 28 7.6
4VGLM_EBV (P03215) Glycoprotein M 27 9.9

>RSE1_KLULA (Q6CXH8) Pre-mRNA-splicing factor RSE1|
          Length = 1269

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 199  SSGI*RCLYLLDVIIQCYMHLTPSFYELVNYV 104
            +S I  C Y L+ +   YM+ TP  +E+VN++
Sbjct: 1086 ASNIKACQYTLETLCHMYMNDTPMKFEIVNHM 1117



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>VGLP_BEV (P23052) Peplomer glycoprotein precursor|
          Length = 1581

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 179 FVPS*CHNSVLYAPDAIFL*VGELCFFTFGTIIIGWQY 66
           FV   C+N+ LY PDA+F         T  + +  W Y
Sbjct: 342 FVAQECYNNALYLPDAVFT--------TLFSTLFSWDY 371



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>ATG26_ASHGO (Q751Z4) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1227

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 181 CLYLLDVIIQCYMHLTPSFYELVNYVFLLLGQSLLVGNTPIC 56
           C  L DV+IQ +++LT        +++   G + L GN  IC
Sbjct: 208 CWLLRDVLIQGHIYLTSRNLLFFAFLYKSNGSARLTGNLSIC 249



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>VGLM_EBV (P03215) Glycoprotein M|
          Length = 405

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = -1

Query: 257 SVLREFWCWCTVYYLKPLCLQWHLEMFVPS*CHNSVLYAPDAIFL*VGELCFFTFGTIII 78
           S+ ++ + W  V+YLKP+    +L            L    ++FL +G   +F  G +++
Sbjct: 187 SIPQDTFLWWVVFYLKPVVTNLYLGCLA-----LETLVFSLSVFLALGNSFYFMVGDMVL 241

Query: 77  GWQYSYLLV 51
           G    +L++
Sbjct: 242 GAVNLFLIL 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,443,232
Number of Sequences: 219361
Number of extensions: 839915
Number of successful extensions: 1877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1877
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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