ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11e09 |
|---|---|
| Clone Library Name | barley_pub |
>HEX2_YEAST (Q00816) Protein HEX2 (Protein SRN1) (Protein REG1)| Length = 1014 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +3 Query: 198 DTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLPSQFNSS 362 ++K P L A+ N +T R + S + Y N+++ SDS + + SQ+NSS Sbjct: 689 ESKEKHVPQLHKASAN--NTTRQHGSHMLLYDDDNYSSSSDSEQQFIEDSQYNSS 741
>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1213 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +3 Query: 177 LGLPMERDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDST 326 LGLP P P + P + DS P PP + H+H F+ T Sbjct: 1079 LGLPFGMPPPPPAAPSVIPFGSLADSISINLPPPPNLHGHHHHLPFAPGT 1128
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = +3 Query: 195 RDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLPS 347 ++ K +KPP PA FD + P P + N A KA VLP+ Sbjct: 2381 QEEKPSEKPPSPPAECTFDPSKTP---PAESLSQENSAAEKTPCKAPVLPA 2428
>SCRL1_ORYSA (Q84TX2) SCAR-like protein 1| Length = 2097 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +3 Query: 207 TPKKPPLEP-ANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVL 341 +P PP EP +N +++ +P P PP+ ++ STK +L Sbjct: 1597 SPVPPPNEPFSNVSYEDPQKPPPLPPLLWRLGKPRLGIASTKGHML 1642
>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21| Length = 348 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +3 Query: 201 TKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDST 326 T+ P PP ++T+ ST +PS P + + +A DS+ Sbjct: 189 TQPPPHPPARCSSTHSQSTSSSSPSSPPRKRARSRSASQDSS 230
>WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein| kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 174 LLGLPMERDTKTPKKPPLEPANTNFDSTDRPNPSPPIT 287 L+G +K P +PPL+PA+ S PSPP+T Sbjct: 993 LVGRFQVTSSKEPAEPPLQPASPTL-SRSLKLPSPPLT 1029
>ABI1_RAT (Q9QZM5) Abl interactor 1 (Abelson interactor 1) (Abi-1) (Eps8 SH3| domain-binding protein) (Eps8-binding protein) (e3B1) Length = 475 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +3 Query: 198 DTKTPKKPPLEPANTNFDSTDRPNPSPPITYK 293 D+ TP PP FD + P P PP+ Y+ Sbjct: 358 DSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYE 389
>DBP7_ASPFU (Q4WV71) ATP-dependent RNA helicase dbp7 (EC 3.6.1.-)| Length = 758 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 11/65 (16%) Frame = +3 Query: 180 GLPMERDTKTPKKPPLEPANTNFDSTDRPNPSPPIT-----------YKTHNHTAFSDST 326 G P + D K+ +KPP P T +T NPS P+T +T AF+ + Sbjct: 459 GEPSDTD-KSEEKPPSSPHGTIAPATAFSNPSNPVTLFRLHGSLPQNVRTSTLGAFAKNK 517 Query: 327 KADVL 341 +A VL Sbjct: 518 EASVL 522
>ABI1_HUMAN (Q8IZP0) Abl interactor 1 (Abelson interactor 1) (Abi-1) (Spectrin| SH3 domain-binding protein 1) (Eps8 SH3 domain-binding protein) (Eps8-binding protein) (e3B1) (Nap1-binding protein) (Nap1BP) (Abl-binding protein 4) (AblBP4) Length = 507 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +3 Query: 198 DTKTPKKPPLEPANTNFDSTDRPNPSPPITYK 293 D+ TP PP FD + P P PP+ Y+ Sbjct: 390 DSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYE 421
>ABI1_MOUSE (Q8CBW3) Abl interactor 1 (Abelson interactor 1) (Abi-1) (Spectrin| SH3 domain-binding protein 1) (Eps8 SH3 domain-binding protein) (Eps8-binding protein) (e3B1) (Ablphilin-1) Length = 480 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +3 Query: 198 DTKTPKKPPLEPANTNFDSTDRPNPSPPITYK 293 D+ TP PP FD + P P PP+ Y+ Sbjct: 363 DSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYE 394
>FP1_MYTGA (Q27409) Adhesive plaque matrix protein precursor (Foot protein 1)| (MGFP1) (MGFP-1) Length = 751 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +3 Query: 210 PKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLPS 347 P PP A ++ T +P PS P TYK+ + S K P+ Sbjct: 667 PSYPPTYKAKPSYPPTYKPKPSYPPTYKSKSSYPSSYKPKKTYPPT 712
>ZFNL3_ORYSA (Q5NAV3) Zinc finger CCCH type domain-containing protein ZFN-like 3| Length = 466 Score = 28.1 bits (61), Expect = 5.5 Identities = 20/47 (42%), Positives = 21/47 (44%) Frame = +2 Query: 170 VAAGVANGARHQNPKKAPTGTSQYKF*LDRQTKPKSSYNLQDAQPHR 310 V AG G HQ P A T SQY L T P SS + A P R Sbjct: 254 VQAGPFYGLSHQGPSAAVTYGSQYA-PLSSSTMPSSSSKQEPAFPAR 299
>UBP7_YEAST (P40453) Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.1.2.15)| (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing protease 7) (Deubiquitinating enzyme 7) Length = 1071 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +3 Query: 192 ERDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKT 296 E TK P+ P +P + RP P PP++ T Sbjct: 491 ESSTKVPEPPSWKPPDLPIRLRKRPPPPPPVSMPT 525
>BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle protein 1)| Length = 963 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/51 (25%), Positives = 21/51 (41%) Frame = +3 Query: 195 RDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLPS 347 + T++P PP + +DS + PS P Y T D +P+ Sbjct: 251 KPTRSPNTPPPRQPSGGYDSDGQTPPSSPRIYNTRRPNNHGPGYPEDQVPT 301
>FP1_MYTED (Q25460) Adhesive plaque matrix protein (Polyphenolic adhesive| protein) (Foot protein 1) (MEFP1) (Fragment) Length = 875 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +3 Query: 210 PKKPPLEPANTNFDSTDRPNPSPPITYKT 296 P PP A ++ T +P PS P TYK+ Sbjct: 753 PTYPPTYKAKPSYPPTYKPKPSYPPTYKS 781
>INO1_CANAL (P42800) Inositol-3-phosphate synthase (EC 5.5.1.4)| (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) Length = 520 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -3 Query: 234 LVPVGAFLGFWCRAPLATP 178 L PV + L +W +APLA P Sbjct: 464 LYPVASLLSYWLKAPLARP 482
>BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein homolog| Length = 1849 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 146 MLQKNSLNVAAGVANGARHQNPKKA 220 ML ++ V V NG HQ PK+A Sbjct: 1721 MLDEHDFEVRGDVVNGRNHQGPKRA 1745
>BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 146 MLQKNSLNVAAGVANGARHQNPKKA 220 ML ++ V V NG HQ PK+A Sbjct: 1728 MLNEHDFEVRGDVVNGRNHQGPKRA 1752
>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 146 MLQKNSLNVAAGVANGARHQNPKKA 220 ML ++ V V NG HQ PK+A Sbjct: 1728 MLNEHDFEVRGDVVNGRNHQGPKRA 1752
>BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 146 MLQKNSLNVAAGVANGARHQNPKKA 220 ML ++ V V NG HQ PK+A Sbjct: 1728 MLNEHDFEVRGDVVNGRNHQGPKRA 1752
>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger| protein 53) Length = 1863 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 146 MLQKNSLNVAAGVANGARHQNPKKA 220 ML ++ V V NG HQ PK+A Sbjct: 1728 MLNEHDFEVRGDVVNGRNHQGPKRA 1752
>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 146 MLQKNSLNVAAGVANGARHQNPKKA 220 ML ++ V V NG HQ PK+A Sbjct: 1728 MLNEHDFEVRGDVVNGRNHQGPKRA 1752
>ZEP2_HUMAN (P31629) Human immunodeficiency virus type I enhancer-binding protein| 2 (HIV-EP2) (MHC-binding protein 2) (MBP-2) Length = 2446 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +3 Query: 174 LLGLPMERDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTH 299 LLG + P + PL A+ + RP P P T TH Sbjct: 2345 LLGPDQPARVQEPHQNPLGSAHVSIRHFSRPEPGQPCTSATH 2386
>FYB_HUMAN (O15117) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)| (p120/p130) (SLP-76-associated phosphoprotein) (SLAP-130) Length = 783 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +3 Query: 192 ERDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDST 326 ++++ TPK+ PL P T +PN P + + T+ +ST Sbjct: 336 DKNSATPKQKPLPPLFTLGPPPPKPNRPPNVDLTKFHKTSSGNST 380 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,564,926 Number of Sequences: 219361 Number of extensions: 694743 Number of successful extensions: 2604 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2373 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2599 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
